logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001833_01520

You are here: Home > Sequence: MGYG000001833_01520

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; CAG-274; UMGS1441;
CAZyme ID MGYG000001833_01520
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1664 MGYG000001833_58|CGC1 178178.38 4.1757
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001833 2107204 MAG Denmark Europe
Gene Location Start: 2393;  End: 7387  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001833_01520.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 1203 1554 4.3e-89 0.9755434782608695
PL1 238 404 7.9e-41 0.8118811881188119

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 3.24e-47 128 408 34 279
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 3.10e-34 240 406 17 190
Amb_all domain.
pfam00544 Pec_lyase_C 3.53e-18 207 402 1 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam13229 Beta_helix 3.49e-10 1309 1518 2 157
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
cd14256 Dockerin_I 1.56e-09 866 920 1 57
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ACX62589.1 2.19e-140 44 587 44 567
QOT09127.1 3.08e-138 28 587 30 567
AYB46946.1 5.90e-138 44 587 44 567
ASR49574.1 2.04e-137 5 590 1 567
AIQ38798.1 1.28e-136 5 590 1 570

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 2.14e-24 183 404 24 248
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1VBL_A 4.45e-17 240 402 133 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1AIR_A 1.45e-13 184 418 22 273
ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi]
2EWE_A 3.44e-13 184 418 22 273
ChainA, Pectate lyase C [Dickeya chrysanthemi]
1PCL_A 1.49e-12 199 432 39 300
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94576 3.96e-38 1195 1605 27 434
Uncharacterized protein YwoF OS=Bacillus subtilis (strain 168) OX=224308 GN=ywoF PE=3 SV=1
B1B6T1 6.28e-24 191 416 63 286
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
Q8GCB2 6.28e-24 191 416 63 286
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
Q65DC2 6.28e-24 191 416 63 286
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
Q5AVN4 5.22e-16 223 421 82 283
Pectate lyase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000241 0.999093 0.000171 0.000188 0.000149 0.000140

TMHMM  Annotations      download full data without filtering help

start end
7 29