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CAZyme Information: MGYG000001854_00629

You are here: Home > Sequence: MGYG000001854_00629

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; Borkfalkiaceae; UBA11940;
CAZyme ID MGYG000001854_00629
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1905 MGYG000001854_6|CGC1 204104.7 4.1692
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001854 1440109 MAG Denmark Europe
Gene Location Start: 78835;  End: 84552  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001854_00629.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 1118 1316 3e-36 0.8415841584158416
CBM77 1804 1897 1.7e-26 0.9029126213592233

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam18283 CBM77 4.28e-33 1806 1899 14 108
Carbohydrate binding module 77. This domain is the non-catalytic carbohydrate binding module 77 (CBM77) present in Ruminococcus flavefaciens. CBMs fulfil a critical targeting function in plant cell wall depolymerisation. In CBM77, a cluster of conserved basic residues (Lys1092, Lys1107 and Lys1162) confer calcium-independent recognition of homogalacturonan.
COG3866 PelB 8.02e-29 1122 1320 97 278
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 1.41e-14 1127 1315 17 186
Amb_all domain.
pfam00544 Pec_lyase_C 7.15e-09 1196 1315 89 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CDR31241.1 3.01e-146 901 1890 334 1283
BBF42492.1 1.18e-117 900 1521 40 648
ACR71161.1 2.97e-106 896 1903 41 894
ADU23076.1 2.52e-100 901 1377 762 1212
QEH68115.1 3.01e-54 901 1397 41 475

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5FU5_A 5.75e-17 1806 1897 19 109
Thecomplexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition [Ruminococcus flavefaciens]
3VMV_A 3.95e-14 1124 1329 77 257
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1AIR_A 1.28e-11 1134 1322 81 264
ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi]
2EWE_A 3.03e-11 1134 1322 81 264
ChainA, Pectate lyase C [Dickeya chrysanthemi]
1VBL_A 7.83e-11 1127 1315 133 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q6CZT3 2.64e-13 1134 1331 102 294
Pectate lyase 2 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=pel2 PE=1 SV=1
P04959 6.33e-13 1134 1329 102 297
Pectate lyase B OS=Dickeya chrysanthemi OX=556 GN=pelB PE=3 SV=1
P0C1C2 8.37e-13 1134 1334 102 301
Pectate lyase 3 OS=Pectobacterium carotovorum OX=554 GN=pel3 PE=1 SV=1
P0C1C1 8.37e-13 1134 1331 102 294
Pectate lyase 2 OS=Pectobacterium carotovorum OX=554 GN=pel2 PE=3 SV=1
P0C1C3 1.12e-12 1134 1334 102 301
Pectate lyase 3 OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pel3 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000041 0.007569 0.992414 0.000006 0.000008 0.000005

TMHMM  Annotations      download full data without filtering help

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