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CAZyme Information: MGYG000001857_00394
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Succinivibrionaceae; Succinivibrio; | |||||||||||
| CAZyme ID | MGYG000001857_00394 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 3165; End: 4472 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 12 | 371 | 1.8e-119 | 0.9887005649717514 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 2.28e-164 | 12 | 389 | 5 | 377 | lipid-A-disaccharide synthase; Reviewed |
| COG0763 | LpxB | 9.03e-139 | 12 | 389 | 5 | 381 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| pfam02684 | LpxB | 2.70e-117 | 12 | 383 | 2 | 374 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| TIGR00215 | lpxB | 3.14e-107 | 12 | 385 | 9 | 384 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK01021 | lpxB | 1.05e-52 | 4 | 336 | 222 | 551 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QIR16202.1 | 9.13e-114 | 2 | 387 | 1 | 379 |
| QIJ05384.1 | 1.07e-113 | 5 | 384 | 3 | 376 |
| QWK94058.1 | 1.22e-113 | 8 | 389 | 13 | 388 |
| QWL03673.1 | 3.05e-113 | 5 | 384 | 3 | 376 |
| BCV37365.1 | 4.31e-113 | 5 | 384 | 3 | 376 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8S_A | 2.91e-94 | 5 | 388 | 3 | 382 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
| 5W8N_A | 8.20e-94 | 5 | 388 | 3 | 382 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| B1KNT0 | 9.20e-113 | 2 | 387 | 1 | 379 | Lipid-A-disaccharide synthase OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=lpxB PE=3 SV=1 |
| Q8EGG2 | 1.23e-110 | 2 | 387 | 1 | 379 | Lipid-A-disaccharide synthase OS=Shewanella oneidensis (strain MR-1) OX=211586 GN=lpxB PE=3 SV=1 |
| Q0HGW8 | 2.46e-110 | 2 | 400 | 1 | 384 | Lipid-A-disaccharide synthase OS=Shewanella sp. (strain MR-4) OX=60480 GN=lpxB PE=3 SV=1 |
| Q0HT75 | 3.48e-110 | 2 | 387 | 1 | 379 | Lipid-A-disaccharide synthase OS=Shewanella sp. (strain MR-7) OX=60481 GN=lpxB PE=3 SV=1 |
| A0KZ10 | 3.48e-110 | 2 | 400 | 1 | 384 | Lipid-A-disaccharide synthase OS=Shewanella sp. (strain ANA-3) OX=94122 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000057 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |