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CAZyme Information: MGYG000001876_01434

You are here: Home > Sequence: MGYG000001876_01434

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Acetatifactor sp900760705
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Acetatifactor; Acetatifactor sp900760705
CAZyme ID MGYG000001876_01434
CAZy Family PL22
CAZyme Description Oligogalacturonate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
384 MGYG000001876_32|CGC1 43859.21 5.6711
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001876 3172346 MAG Denmark Europe
Gene Location Start: 6850;  End: 8004  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001876_01434.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL22 162 382 6e-19 0.4377358490566038
PL22 32 151 5.2e-17 0.4339622641509434

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam14583 Pectate_lyase22 4.21e-34 5 381 4 379
Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
COG0823 TolB 4.83e-04 15 144 222 343
Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport].
PRK03629 tolB 7.81e-04 65 141 268 345
Tol-Pal system protein TolB.
COG0823 TolB 0.002 157 258 209 302
Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AJQ29048.1 1.54e-146 3 383 1 381
SET71872.1 9.26e-141 3 383 1 381
AGK03506.1 2.85e-138 12 383 6 382
AWR87801.1 1.38e-137 12 383 1 377
ABU58528.1 8.05e-130 6 383 3 390

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3PE7_A 5.68e-32 5 381 4 379
Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081]
3C5M_A 1.32e-27 14 381 13 379
Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q59418 1.21e-32 5 383 4 381
Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2
P21258 2.25e-31 5 383 4 381
Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000027 0.000013 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001876_01434.