CAZyme Information: MGYG000001879_01088

Basic Information

• Lineage: Bacteria; Firmicutes_A; Clostridia; Oscillospirales; CAG-272; HGM12650
• CAZyme ID: MGYG000001879_01088
• CAZy Family: CBM67
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
769		86984.45	5.1756

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001879	1511900	MAG	Denmark	Europe

• Gene Location: Start: 102; End: 2411 Strand: -

Full Sequence      

MRKSFTLRAKPEKAEILITGLGFYDLFVNGKMITKGLTAPYISNSDDLIYYDLYDLTDKL
REGENVIGIVLGDGMQNPKTAVWNFCDAVYTSSPKTAFNFRAEAGGESVEFDATSLVWKE
SPITFNDLRSGVHYDARLEEDGWCEAGFDAHDWKPVMKAENPRGEAKLCTAEPIKVTEEI
PPVSIKKGELAPYKEIRDVTERFGHLDIPDSNIEKTGGYIYDFGVNTAGVFRFKIKDAKR
GQKISFQCGEYLDEEGRLTYQNIGFYPNGYSQRDIYICRGDKDEEVFVPMFTYHGCRYIY
VNGITEEQATKEAMTFLRAHSDVKMRADFKCSDDIVNKLFAMALNSDLSNFWYFPTDCPH
REKNGWTGDASASAEHMIMTFTPENSYREWLCNIRHAQNIEGAIPGIIPTAGWGFDWGNG
PAWDSVIFNLPYMMYHYRGDTEIIRENRHMMMRYLEYIASKRDDDGLIHIGLGDWIPVDG
GKVQPTLALTDSIMVYDMCRKGEEMFCAIGNTLDASYAKNLGDVVKKAIRENLIDFCTMT
TTCHSQTGLAMCIYYGIFEGAELNAAGKKLAETVHDEGDNFDVGFLGLRTIFHALAMTGN
ADLAYHLIAKEDFPSYGYYVNKLPMTSLPESIASTYGALASLNHHFYGDINHFFLRRILG
VNVNPTGKDANRIVVAPNFISTLNFAEGHYDAPAGRVYIKWQRDGENVKLTVKADEGVKT
EIRLPDGYMFVRDGQNDFVRYKYGDADDMTVIKTSERFKNGPMARRYIC

Enzyme Prediction     

No EC number prediction in MGYG000001879_01088.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH78	215	724	9.8e-118	0.9900793650793651
CBM67	1	162	1.4e-23	0.8636363636363636

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17389	Bac_rhamnosid6H	1.24e-62	329	658	6	340	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531	Bac_rhamnosid_N	7.81e-33	9	178	1	172	Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam05592	Bac_rhamnosid	7.43e-17	217	310	6	93	Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam17390	Bac_rhamnosid_C	1.92e-07	672	727	11	66	Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUT48046.1	1.75e-127	2	726	144	845
QGQ94103.1	4.36e-123	2	712	147	828
APO32478.1	6.71e-122	214	562	18	362
BBK91320.1	1.08e-121	2	738	149	861
QJE27359.1	1.28e-121	2	738	142	854

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6I60_A	2.93e-88	2	748	180	923	Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]
3W5M_A	2.48e-62	1	746	305	1017	CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6GSZ_A	1.38e-57	2	707	135	822	Crystalstructure of native alfa-L-rhamnosidase from Aspergillus terreus [Aspergillus terreus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
T2KPL4	5.16e-69	2	713	188	895	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1
Q82PP4	1.26e-61	1	746	305	1017	Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
P9WF03	2.09e-56	1	731	173	885	Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
T2KNB2	3.69e-54	1	725	177	879	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.999819	0.000231	0.000002	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001879_01088.