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CAZyme Information: MGYG000001896_00606

You are here: Home > Sequence: MGYG000001896_00606

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UMGS1840 sp900555525
Lineage Bacteria; Firmicutes_A; Clostridia; UMGS1840; UMGS1840; UMGS1840; UMGS1840 sp900555525
CAZyme ID MGYG000001896_00606
CAZy Family GH10
CAZyme Description Anti-sigma-I factor RsgI6
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
461 53966.13 6.357
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001896 2208881 MAG Denmark Europe
Gene Location Start: 5140;  End: 6525  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001896_00606.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH10 60 380 3.8e-46 0.9537953795379538

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
smart00633 Glyco_10 8.93e-35 101 381 3 262
Glycosyl hydrolase family 10.
COG3693 XynA 2.99e-32 86 388 52 343
Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
pfam00331 Glyco_hydro_10 9.97e-28 81 380 24 306
Glycosyl hydrolase family 10.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QMW04637.1 7.24e-103 22 433 32 437
QHV94149.1 1.24e-97 21 435 31 438
QIP12711.1 9.84e-97 21 435 31 438
AVM44415.1 2.46e-96 22 434 22 432
AXE20297.1 6.85e-90 18 433 24 432

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7D88_A 1.70e-27 29 427 52 407
ChainA, Beta-xylanase [Bacillus sp. (in: Bacteria)]
7D89_A 3.70e-26 29 427 52 407
ChainA, Beta-xylanase [Bacillus sp. (in: Bacteria)]
1XYZ_A 2.61e-16 78 386 49 344
ChainA, 1,4-BETA-D-XYLAN-XYLANOHYDROLASE [Acetivibrio thermocellus],1XYZ_B Chain B, 1,4-BETA-D-XYLAN-XYLANOHYDROLASE [Acetivibrio thermocellus]
6FHE_A 1.18e-13 102 379 58 335
Highlyactive enzymes by automated modular backbone assembly and sequence design [synthetic construct]
4W8L_A 1.75e-13 57 361 7 315
Structureof GH10 from Paenibacillus barcinonensis [Paenibacillus barcinonensis],4W8L_B Structure of GH10 from Paenibacillus barcinonensis [Paenibacillus barcinonensis],4W8L_C Structure of GH10 from Paenibacillus barcinonensis [Paenibacillus barcinonensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A3DH97 8.80e-25 29 422 388 737
Anti-sigma-I factor RsgI6 OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=rsgI6 PE=1 SV=1
F4JG10 5.31e-21 25 435 369 741
Endo-1,4-beta-xylanase 3 OS=Arabidopsis thaliana OX=3702 GN=XYN3 PE=2 SV=1
Q02290 9.71e-16 118 387 72 323
Endo-1,4-beta-xylanase B OS=Neocallimastix patriciarum OX=4758 GN=xynB PE=2 SV=1
P10478 5.25e-15 78 386 539 834
Endo-1,4-beta-xylanase Z OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=xynZ PE=1 SV=3
O69230 2.18e-12 50 361 366 681
Endo-1,4-beta-xylanase C OS=Paenibacillus barcinonensis OX=198119 GN=xynC PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000072 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001896_00606.