CAZyme Information: MGYG000001903_00670

Basic Information

• Lineage: Bacteria; Firmicutes_A; Clostridia; Monoglobales; Firm-18
• CAZyme ID: MGYG000001903_00670
• CAZy Family: GH28
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
890		98865.71	4.4708

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001903	2217690	MAG	Denmark	Europe

• Gene Location: Start: 7451; End: 10123 Strand: -

Full Sequence      

MRKILAAVLAAAIALSGTVFAAGEEEKTYRLLNGLIKSIEVEGGSDSPEKMIDGHYDSSF
RMYKPPMTTDIFIDFGDNFVTVEKIAVAVLGGLTGGITKVDLDWFDGSEYRPLRRGISLS
WTLRDASSEKRTIPCDGVFTDKIRIRVLEANKQNGYWEINELMVYGHDKGTDVKSVPEQS
VTVKRGEKLVLPETVGVVLKNGKETQQSVEWENKTPDTFTAGKFSVYGEIPGSSIKAVYS
IEVTGGESHWADSAISEMAKRNAYDFDTTDPDSAVTRNRLADAVYNYLALEHDYMPDRVK
WTKEQVFTDVSQESELYDQINSAADAGVFEGFGISDVFDGEKTVTRLEAAQALLNIYNYH
GSEVKPSETEHSFKDTDDSAVKTICGLGIISAGEYYRPNDTVTEAELCTMLDRMTGVLQQ
CRVYPVPDGVDKLYDYKITVNGEPLETYKTYAFPGNNIQTTTVIGRPATEVSVAYFDFFG
EAEIEIEACGGEFAIGDTPIRPLSEGIVPTINGNKIKFTLNKPCNLSVEPFGTEHPLHLF
ANPIDKNLPDFDDPNVTYFGPGVHYIDPIYLKDNETLYLDGGAVLYVNRQEKDEGLHTVY
GYQLTFIDAAFMADKKDTTYDTKMDNITIRGRGIVSGNKTLEKFQRHKLIQLYGVKNSSV
DGIILLESSGWNFFIAQSDGVYVNNIKMVGHYANNDGIDACDSVNLYIQNSFAHNADDSF
LVKSWYPVDNVTFKNCVVWNDVSTSLGAVCEINRPVTNVLYKDCTVIHSSNPLWTANSGG
VVGIWDAEGGDIDNFVFENTVIEDCVAGKEPIKVNLHSHGVEFHDDYEVKNITFKNFKIL
DTRENTVAIVGPREHGIHDVTFENLEINGEKVLSVDDRFVIQNADNVTVK

Enzyme Prediction     

No EC number prediction in MGYG000001903_00670.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH28	558	886	1.4e-41	0.9415384615384615

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG5434	Pgu1	8.37e-12	558	880	118	466	Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295	Glyco_hydro_28	1.58e-11	628	871	62	307	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
pfam07532	Big_4	1.09e-06	180	233	5	59	Bacterial Ig-like domain (group 4). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.
PLN03010	PLN03010	1.68e-06	627	871	141	381	polygalacturonase
NF033190	inl_like_NEAT_1	6.44e-05	247	375	587	705	NEAT domain-containing leucine-rich repeat protein. Members of this family have an N-terminal NEAT (near transporter) domain often associated with iron transport, followed by a leucine-rich repeat region with significant sequence similarity to the internalins of Listeria monocytogenes. However, since Bacillus cereus (from which this protein was described, in PMID:16978259) is not considered an intracellular pathogen, and the function may be iron transport rather than internalization, applying the name "internalin" to this family probably would be misleading.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QTH43708.1	1.44e-127	424	890	8	467
AWW32777.1	2.49e-62	423	889	30	490
SDS06655.1	1.87e-59	417	890	36	510
ALJ04708.1	3.69e-59	419	836	41	438
QIU92674.1	2.41e-58	423	873	29	467

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5OLP_A	1.88e-10	642	799	195	354	Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000259	0.999043	0.000182	0.000165	0.000176	0.000152

TMHMM  Annotations     

start	end
5	22