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CAZyme Information: MGYG000001910_00167

You are here: Home > Sequence: MGYG000001910_00167

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Duncaniella dubosii
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; Duncaniella; Duncaniella dubosii
CAZyme ID MGYG000001910_00167
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
498 MGYG000001910_1|CGC4 54430.94 6.0977
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001910 3154435 MAG Denmark Europe
Gene Location Start: 188897;  End: 190393  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001910_00167.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 78 462 6.5e-84 0.9230769230769231

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.87e-81 8 448 32 466
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03003 PLN03003 1.68e-20 50 404 21 303
Probable polygalacturonase At3g15720
pfam00295 Glyco_hydro_28 1.69e-20 231 403 85 250
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 8.80e-18 4 403 9 340
Probable polygalacturonase
PLN02218 PLN02218 3.69e-17 53 479 68 408
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QCD41743.1 0.0 1 498 1 498
QCP71949.1 3.53e-315 1 498 1 499
QCD38261.1 3.53e-315 1 498 1 499
QIM10174.1 8.56e-184 37 479 32 473
QNT67369.1 5.95e-182 8 497 6 507

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 5.73e-73 40 477 15 429
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 1.34e-66 29 455 21 422
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 3.17e-37 20 403 128 501
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
1BHE_A 9.62e-16 93 470 51 373
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
4MXN_A 1.91e-11 52 327 21 236
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 2.75e-46 47 455 57 421
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922 9.31e-40 44 408 144 499
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P27644 1.40e-34 234 447 25 249
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
Q9LW07 1.26e-21 50 404 21 303
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1
Q02096 3.19e-21 45 477 77 447
Polygalacturonase OS=Persea americana OX=3435 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000384 0.998740 0.000287 0.000198 0.000176 0.000156

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001910_00167.