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CAZyme Information: MGYG000001927_00994

You are here: Home > Sequence: MGYG000001927_00994

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella sp900547005
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp900547005
CAZyme ID MGYG000001927_00994
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
471 MGYG000001927_11|CGC1 53156.81 9.4992
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001927 2803818 MAG Denmark Europe
Gene Location Start: 36659;  End: 38074  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001927_00994.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13458 Peripla_BP_6 6.44e-09 184 416 68 292
Periplasmic binding protein. This family includes a diverse range of periplasmic binding proteins.
smart00257 LysM 5.50e-07 31 68 2 43
Lysin motif.
cd00118 LysM 6.92e-07 30 58 2 30
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
COG0683 LivK 2.05e-06 183 416 76 305
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism].
pfam01476 LysM 3.84e-06 31 57 1 27
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATV30969.1 4.84e-193 1 471 1 461
ATV55369.1 1.96e-192 1 471 1 461
ATV41257.1 7.92e-192 1 471 1 461
ATV38346.1 7.92e-192 1 471 1 461
ATV32334.1 7.92e-192 1 471 1 461

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000222 0.999155 0.000183 0.000147 0.000140 0.000132

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001927_00994.