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CAZyme Information: MGYG000001970_01348

You are here: Home > Sequence: MGYG000001970_01348

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA2882 sp002362385
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; UBA2882; UBA2882 sp002362385
CAZyme ID MGYG000001970_01348
CAZy Family GH0
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
414 MGYG000001970_12|CGC1 46744.37 4.1108
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001970 3441652 MAG Denmark Europe
Gene Location Start: 9213;  End: 10457  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001970_01348.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01471 PG_binding_1 3.99e-12 339 397 1 54
Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
COG3409 PGRP 2.82e-09 333 397 38 99
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
COG3409 PGRP 9.77e-09 316 400 103 183
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
TIGR02669 SpoIID_LytB 4.08e-05 173 310 106 260
SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General]
pfam13620 CarboxypepD_reg 0.002 16 109 6 81
Carboxypeptidase regulatory-like domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AWY98201.1 1.02e-184 3 412 10 419
ASM69598.1 6.40e-181 3 412 10 419
QRV22093.1 1.08e-180 3 412 4 414
QUO33025.1 1.64e-180 10 412 12 416
VCV21206.1 2.42e-180 5 412 9 417

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000044 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001970_01348.