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CAZyme Information: MGYG000001998_00595

You are here: Home > Sequence: MGYG000001998_00595

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lachnospira sp900552795
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira; Lachnospira sp900552795
CAZyme ID MGYG000001998_00595
CAZy Family GH28
CAZyme Description Exo-poly-alpha-D-galacturonosidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
455 MGYG000001998_3|CGC2 50453.05 4.7835
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001998 2300661 MAG Spain Europe
Gene Location Start: 28230;  End: 29597  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001998_00595.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 44 436 7e-81 0.9261538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.54e-74 46 368 109 406
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 6.13e-21 199 427 85 303
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 4.92e-19 198 366 137 297
Probable polygalacturonase At3g15720
PLN03010 PLN03010 8.13e-17 207 366 165 316
polygalacturonase
PLN02218 PLN02218 8.67e-16 14 440 67 421
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ACR71465.1 9.68e-224 1 455 4 458
QNM02031.1 4.01e-208 2 433 5 436
QSI03288.1 4.59e-162 5 432 7 433
ABX42928.1 1.36e-159 3 447 4 444
AGA79317.1 4.41e-130 4 409 44 454

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 6.27e-65 5 452 18 436
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 5.69e-56 10 440 40 442
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 1.37e-32 15 413 157 542
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
1BHE_A 1.69e-17 60 428 51 360
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 6.13e-38 14 427 62 424
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922 2.07e-30 13 374 150 497
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P27644 1.44e-27 202 350 25 176
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
Q7M1E7 5.93e-18 195 428 179 401
Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1
P18192 7.96e-18 58 428 75 386
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000047 0.000006 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001998_00595.