CAZyme Information: MGYG000002014_01878

Basic Information

• Species: Merdibacter sp900754715
• Lineage: Bacteria; Firmicutes; Bacilli; Erysipelotrichales; Erysipelotrichaceae; Merdibacter; Merdibacter sp900754715
• CAZyme ID: MGYG000002014_01878
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1173		124541.44	3.8711

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002014	2253473	MAG	Spain	Europe

• Gene Location: Start: 962; End: 4483 Strand: +

Full Sequence      

MKNTKKGRIASLGLALFMGVSSVFGTSVLAVSAQESELSNEEKAREIVSQMSLEEKIGQK
LMLSFRSGWTMRDGTSISAVTRINDEIYDIIGTYDIGSVILFAANFDADATVNVELTDGL
QRAAMDESLGENSIPLMIGADQEGGIVYRLTGGTALPGNMALGATGDTQNAVMAGEIIGS
ELSAVGVNANFGPVADVNNNANNPVIGLRSFSSDPQIAAEFTQAYIEGVHSQNVATTAKH
FPGHGNVTTDSHTGLPSIGSTLDELRQVELVPFQAAIDAGTDMIMTAHIQFPNAFSETIY
SDLQDEWISPPATMSRAILTDLLRGEMGFDGVIVTDSMTMDAVANYFDVNERNLLAVQAG
VDILDIPFNDMSSWADMENKLIPLIDAFVQAYTEEDGYNGITLSQDELDESVTRILKMKL
DRGIMDLSEDYRTLEEKQAAAAATVGSVEHRETERLISANAVTVVKNDNAVLPLKLDENS
RVLFASTYSRNNNRFVLAWERAKQAGLIPEGADYKILQHYNWTGLGDQVNSAINSDGTNF
SGTNQDLLDWCTVLVHASEISSASNIDGYRVACPQLFINYCEGQGKETVAISLNQPYDVQ
AFSEADAIVAVYGTTSAGVDITESFGGGTVSATAAFSPNLTAGVEVILGTFGASGKLPVD
IPRYISGTGTYSDEIVYQLGYGLTYDSLVSDPDKSSLQTLVDQVNALDLNAYTPESVAAA
ETQINTMNEALTDANNTLLTHKLAQSVVDAMTTELQDSYDAVMAVLEAQQTDTAASEAAL
QALQNMVDKANALGSEDETLNAAIANAQAVLDKDAPTATEVVTALLDLSEAMQALNTEEN
EDALRADVQATIDFINANILTNVDNVRPGKVDALKAAVEVAQTVVDDPEATADELKAANE
AMTKAAQELWEIVTKAELEALIESANGYLDGDYTAESIAILQDAITNAQAVADNDDATTN
EVTEAITNLANAIAGLEKITLDTSALEHEIALVTEMVANIDDYVPSTVEGLADKLAAAQA
AMNATTQDEIDAATATLREARLNARTKADVSALEEIIAYANTLSLSDYTERSVMTLNVAI
AKNEALLTDPEVTPAQVDEAVAEIQKAIDGLVPVSVESVTPDTGNAITDNAASSQSTTAV
PTNTAASDTSSMMFALMIAAGAAACTVYRRKRS

Enzyme Prediction     

No EC number prediction in MGYG000002014_01878.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	133	364	5.3e-65	0.9537037037037037

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	2.17e-85	51	493	1	368	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	1.34e-80	52	416	1	314	Glycosyl hydrolase family 3 N terminal domain.
PRK05337	PRK05337	4.10e-55	96	364	26	277	beta-hexosaminidase; Provisional
PRK15098	PRK15098	2.34e-19	8	475	3	408	beta-glucosidase BglX.
NF033804	Streccoc_I_II	5.87e-04	711	972	149	426	antigen I/II family LPXTG-anchored adhesin. Members of the antigen I/II family are adhesins with a glucan-binding domain, two types of repetitive regions, an isopeptide bond-forming domain associated with shear resistance, and a C-terminal LPXTG motif for anchoring to the cell wall. They occur in oral Streptococci, and tend to be major cell surface adhesins. Members of this family include SspA and SspB from Streptococcus gordonii, antigen I/II from S. mutans, etc.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QQY28952.1	0.0	1	1040	1	1029
QQV07224.1	0.0	1	1043	1	1032
QMW74468.1	0.0	1	1040	1	1029
QPS12259.1	0.0	1	1040	1	1029
BCL56675.1	1.53e-172	14	762	5	727

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3BMX_A	4.45e-116	14	683	9	634	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	5.82e-115	44	683	9	608	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	1.03e-114	19	683	18	638	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
6K5J_A	8.35e-64	51	516	11	424	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
4ZM6_A	5.93e-57	52	663	8	529	Aunique GCN5-related glucosamine N-acetyltransferase region exist in the fungal multi-domain GH3 beta-N-acetylglucosaminidase [Rhizomucor miehei CAU432],4ZM6_B A unique GCN5-related glucosamine N-acetyltransferase region exist in the fungal multi-domain GH3 beta-N-acetylglucosaminidase [Rhizomucor miehei CAU432]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	2.44e-115	14	683	9	634	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	7.05e-74	51	661	16	596	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
Q7WUL3	3.85e-41	133	615	82	530	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1
B2FPW9	7.85e-38	79	364	7	275	Beta-hexosaminidase OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=nagZ PE=3 SV=1
B4SRK3	7.85e-38	79	364	7	275	Beta-hexosaminidase OS=Stenotrophomonas maltophilia (strain R551-3) OX=391008 GN=nagZ PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000308	0.998982	0.000160	0.000196	0.000158	0.000146

TMHMM  Annotations     

start	end
9	31