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CAZyme Information: MGYG000002025_00865

You are here: Home > Sequence: MGYG000002025_00865

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; RUG12045;
CAZyme ID MGYG000002025_00865
CAZy Family GH0
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
426 MGYG000002025_13|CGC2 48179.26 4.3506
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002025 2870501 MAG Spain Europe
Gene Location Start: 50488;  End: 51768  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002025_00865.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01471 PG_binding_1 3.10e-14 352 412 2 57
Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
COG3409 PGRP 1.15e-09 328 412 103 183
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
COG3409 PGRP 5.75e-09 349 414 42 104
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
pfam13620 CarboxypepD_reg 3.87e-07 23 121 1 81
Carboxypeptidase regulatory-like domain.
pfam01060 TTR-52 0.006 36 63 10 39
Transthyretin-like family. TTR-52 was called family 2 in, and has weak similarity to transthyretin (formerly called pre-albumin) which transports thyroid hormones. The specific function of this protein is as a bridging molecule in apoptosis cross-linking dying cells to phagocytes. TTR-52 bridges by cross-linking surface-exposed phosphatidylserine (PtdSer) on apoptotic cells to the CED-1 receptor, a transmembrane receptor, on phagocytes. TTR-52 has an open beta-barrel-like structure.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QEI32542.1 1.89e-197 5 425 7 429
QHB25032.1 1.89e-197 5 425 7 429
QRT31086.1 2.89e-197 5 425 9 431
AWY98201.1 3.20e-196 17 425 12 420
ASM69598.1 3.71e-195 14 425 9 420

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7RUM_A 2.68e-07 345 413 24 86
ChainA, Endolysin [Salmonella phage GEC_vB_GOT],7RUM_B Chain B, Endolysin [Salmonella phage GEC_vB_GOT]
1LBU_A 1.14e-06 346 415 10 76
HydrolaseMetallo (zn) Dd-peptidase [Streptomyces albus G]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P00733 9.21e-06 346 415 52 118
Zinc D-Ala-D-Ala carboxypeptidase OS=Streptomyces albus G OX=1962 PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000051 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002025_00865.