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CAZyme Information: MGYG000002042_00668

You are here: Home > Sequence: MGYG000002042_00668

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species CAG-110 sp900762935
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; CAG-110; CAG-110 sp900762935
CAZyme ID MGYG000002042_00668
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
483 MGYG000002042_18|CGC1 53960.54 4.8857
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002042 2052895 MAG China Asia
Gene Location Start: 3097;  End: 4548  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002042_00668.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 190 462 2.4e-40 0.7323076923076923

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00295 Glyco_hydro_28 3.43e-11 215 427 72 273
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
COG5434 Pgu1 1.17e-08 226 338 236 344
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03003 PLN03003 3.27e-07 228 338 138 241
Probable polygalacturonase At3g15720
pfam13229 Beta_helix 8.96e-07 230 334 2 105
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
PLN03010 PLN03010 1.77e-06 224 462 153 381
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QOS79397.1 1.21e-111 8 482 2 477
QDA61654.1 1.87e-106 10 483 25 468
QYR23068.1 7.73e-105 23 483 16 477
AFH60350.1 3.08e-103 23 483 16 478
QYR23224.1 2.72e-102 25 483 17 476

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000063 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002042_00668.