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CAZyme Information: MGYG000002126_00847
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | UBA1390 sp900764045 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; UBA1390; UBA1390; UBA1390 sp900764045 | |||||||||||
| CAZyme ID | MGYG000002126_00847 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | Endo-polygalacturonase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1330; End: 2625 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 21 | 411 | 8.9e-77 | 0.9661538461538461 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 4.13e-59 | 3 | 308 | 88 | 405 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| PLN02188 | PLN02188 | 1.02e-25 | 2 | 419 | 41 | 401 | polygalacturonase/glycoside hydrolase family protein |
| pfam00295 | Glyco_hydro_28 | 1.60e-21 | 93 | 314 | 54 | 256 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| PLN03003 | PLN03003 | 2.17e-19 | 91 | 312 | 112 | 302 | Probable polygalacturonase At3g15720 |
| PLN03010 | PLN03010 | 4.39e-17 | 1 | 308 | 50 | 317 | polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ANW98240.1 | 2.25e-162 | 5 | 414 | 12 | 430 |
| AGC67830.1 | 2.25e-162 | 5 | 414 | 12 | 430 |
| AGI38870.1 | 2.25e-162 | 5 | 414 | 12 | 430 |
| ANX00772.1 | 3.18e-162 | 5 | 414 | 12 | 430 |
| AVV39224.1 | 4.33e-136 | 1 | 412 | 7 | 415 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JUR_A | 5.36e-43 | 1 | 410 | 31 | 429 | Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima] |
| 5OLP_A | 2.97e-42 | 2 | 410 | 49 | 446 | Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482] |
| 1BHE_A | 1.72e-23 | 14 | 412 | 26 | 374 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
| 2UVE_A | 1.95e-16 | 2 | 393 | 161 | 568 | Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A7PZL3 | 1.82e-36 | 1 | 391 | 66 | 424 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 |
| P26509 | 1.27e-22 | 14 | 412 | 52 | 400 | Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1 |
| P18192 | 1.46e-21 | 14 | 412 | 52 | 400 | Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1 |
| P15922 | 1.02e-19 | 3 | 411 | 157 | 579 | Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1 |
| Q9LW07 | 3.83e-18 | 91 | 312 | 112 | 302 | Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000054 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |