CAZyme Information: MGYG000002190_00003

Basic Information

• Species: Clostridium sp001916075
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium sp001916075
• CAZyme ID: MGYG000002190_00003
• CAZy Family: GH39
• CAZyme Description: HTH-type transcriptional activator RhaS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
688	MGYG000002190_1|CGC1	81354.02	4.8828

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002190	2598727	MAG	Spain	Europe

• Gene Location: Start: 4419; End: 6485 Strand: +

Full Sequence      

MRKQYINYSLNLPVNISYYNIHNYPTHWHSSTEIIYVLEGTINISIDTDSFILKENEVEI
INPDECHSFSSESDNKVLIFQIDPDFFEKYYKDIRNVFFYTNSNDEEDQSGEKYDELKSL
LCKILCEFVQTLDDFDEQIEDILINLLYHLINNFHYLTTDKEELKEKSEQLDRYHRISKY
IFNNYNNNITLQEIAKKEFLSPHYLSHEIKYATGHSFTHLINLTRIEESIKLLLDTSMSI
TEISEEIGFSHVRYYNKNFKLYFGCTPLQYRKKYYLNEKDFDNSKNVTSLDLNNALNLLS
YNLENYDRFNFENKLWNIHINMNESLNIFDNNFKDILNLGEAFDLLIEDNKDILEEVQEE
IHFTYGRLEKMFHNDMGVFIDSDFYNWNRAKSVLEFLYDIDIKPLIVIDNLTFTTEKYRN
VLKSFIEYFSALDFSPIEHLKFQFSSTINKEIKNNLLDFLNSEFNFEILDNDFIIENTLN
QIYDTSYMLPYIIHSTIFKKDNLSFLRNFDVLEKATNITNEVFIGASGIVNDMGIRKPSY
YAFYLLSKLADEIVSIDDGCIVTKSDDLCAILLYCHNNDMDSLAKYDTIYKNGILKKSFK
KKYSLNIANLKSSTRIITYTIDESTGSSYNYWLSMGSPKRLNKEEKEILHKASYPKIEFK
YSKKNSVLNIITELNGYGAKLIILRNIK

Enzyme Prediction     

No EC number prediction in MGYG000002190_00003.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	480	641	3.7e-19	0.35730858468677495

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
smart00342	HTH_ARAC	4.66e-22	189	271	2	84	helix_turn_helix, arabinose operon control protein.
COG2207	AraC	7.53e-22	169	274	17	122	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
pfam12833	HTH_18	8.50e-20	194	273	1	81	Helix-turn-helix domain.
COG4753	YesN	2.05e-14	83	274	252	474	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
COG3664	XynB	1.21e-12	483	658	215	397	Beta-xylosidase [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ASW43808.1	0.0	1	685	1	685
ATD56640.1	0.0	1	688	1	689
QBJ75981.1	0.0	1	688	1	689
SLK21057.1	0.0	1	688	1	689
ATD55683.1	0.0	1	688	1	689

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1PX8_A	8.05e-07	501	657	310	451	Crystalstructure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1PX8_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_A Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_C Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_D Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q5HJR8	6.33e-16	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q6GKK1	3.33e-15	36	658	27	713	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q6GD21	5.80e-15	36	658	27	713	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q8NYT6	5.80e-15	36	658	27	713	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q7A882	1.33e-14	36	658	27	713	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.999963	0.000095	0.000001	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002190_00003.