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CAZyme Information: MGYG000002203_00836

You are here: Home > Sequence: MGYG000002203_00836

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes;
CAZyme ID MGYG000002203_00836
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
769 85665.12 4.5371
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002203 2806770 MAG Spain Europe
Gene Location Start: 57109;  End: 59418  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002203_00836.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 465 761 1e-35 0.7846153846153846

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00295 Glyco_hydro_28 3.48e-17 443 760 18 315
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
COG5434 Pgu1 2.77e-15 435 683 152 398
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03010 PLN03010 3.43e-08 509 577 164 234
polygalacturonase
PLN03003 PLN03003 2.58e-06 509 711 145 326
Probable polygalacturonase At3g15720
PLN02793 PLN02793 2.68e-06 510 693 185 337
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BBL02017.1 8.84e-235 16 756 15 734
QRP58902.1 1.49e-195 14 747 26 756
QQA09745.1 1.49e-195 14 747 26 756
QQT79214.1 1.49e-195 14 747 26 756
ASW16403.1 1.49e-195 14 747 26 756

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 2.00e-10 510 683 198 351
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A2QW66 2.63e-06 410 682 81 339
Probable exopolygalacturonase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pgxA PE=3 SV=1
Q27UB2 2.63e-06 410 682 81 339
Exopolygalacturonase A OS=Aspergillus niger OX=5061 GN=pgxA PE=3 SV=1
Q9LW07 4.79e-06 510 711 146 326
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000012 0.010807 0.989236 0.000003 0.000005 0.000004

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002203_00836.