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CAZyme Information: MGYG000002203_01787

You are here: Home > Sequence: MGYG000002203_01787

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes;
CAZyme ID MGYG000002203_01787
CAZy Family GT9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
343 MGYG000002203_20|CGC1 38164.19 9.8595
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002203 2806770 MAG Spain Europe
Gene Location Start: 56681;  End: 57712  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002203_01787.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT9 77 318 4.4e-40 0.9644444444444444

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd03789 GT9_LPS_heptosyltransferase 1.35e-48 12 338 1 277
lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
COG0859 RfaF 5.26e-40 10 340 1 330
ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis].
pfam01075 Glyco_transf_9 3.17e-20 77 322 1 247
Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
PRK10422 PRK10422 6.76e-07 200 282 206 291
lipopolysaccharide core biosynthesis protein; Provisional
PRK10964 PRK10964 2.07e-05 191 292 192 291
lipopolysaccharide heptosyltransferase RfaC.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AFL77232.1 4.55e-174 1 341 1 340
BBL09491.1 2.41e-169 21 341 1 321
BBL01632.1 3.42e-169 21 341 1 321
BBL07004.1 5.64e-168 21 341 1 321
BBL13855.1 1.33e-154 10 343 2 334

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000052 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002203_01787.