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CAZyme Information: MGYG000002208_00833
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | RUG705 sp900551455 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; RF39; UBA660; RUG705; RUG705 sp900551455 | |||||||||||
| CAZyme ID | MGYG000002208_00833 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 2540; End: 9643 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG4646 | COG4646 | 6.94e-85 | 1078 | 1600 | 1 | 540 | Adenine-specific DNA methylase, N12 class [Replication, recombination and repair]. |
| cd18011 | DEXDc_RapA | 3.28e-09 | 1546 | 1803 | 1 | 182 | DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| smart00487 | DEXDc | 1.43e-08 | 1544 | 1647 | 7 | 110 | DEAD-like helicases superfamily. |
| COG0286 | HsdM | 9.62e-08 | 863 | 1055 | 157 | 375 | Type I restriction-modification system, DNA methylase subunit [Defense mechanisms]. |
| cd17919 | DEXHc_Snf | 1.96e-07 | 1546 | 1801 | 1 | 175 | DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins. Sucrose Non-Fermenting (SNF) proteins DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ASV45029.1 | 0.0 | 785 | 2333 | 1548 | 3186 |
| QIW86704.1 | 0.0 | 785 | 2333 | 1616 | 3254 |
| QIW86628.1 | 0.0 | 785 | 2333 | 1616 | 3254 |
| AXF51455.1 | 2.84e-305 | 792 | 2333 | 1789 | 3423 |
| AEY69616.1 | 2.27e-303 | 792 | 2309 | 1696 | 3303 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q71TF8 | 5.26e-30 | 793 | 2143 | 40 | 1591 | Defense against restriction protein B OS=Escherichia phage P1 OX=2886926 GN=darB PE=3 SV=1 |
| G5EDG2 | 1.04e-06 | 1562 | 2103 | 414 | 900 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 homolog OS=Caenorhabditis elegans OX=6239 GN=M03C11.8 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000054 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |