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CAZyme Information: MGYG000002216_02107
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; ; | |||||||||||
| CAZyme ID | MGYG000002216_02107 | |||||||||||
| CAZy Family | CBM71 | |||||||||||
| CAZyme Description | Chromosome partition protein Smc | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 69; End: 5417 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| CBM71 | 637 | 742 | 9.2e-16 | 0.5170731707317073 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam18565 | Glyco_hydro2_C5 | 7.36e-37 | 371 | 464 | 3 | 97 | Glycoside hydrolase family 2 C-terminal domain 5. Domain 5 is found in dimeric beta-D-galactosidase from Paracoccus sp. 32d, which contributes to stabilization of the functional dimer. It is suggested that the location of this domain 5, may be one of the factors responsible for the creation of a functional dimer and cold-adaptation of this enzyme. |
| TIGR02168 | SMC_prok_B | 3.25e-20 | 1447 | 1635 | 216 | 403 | chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins] |
| COG1196 | Smc | 6.26e-20 | 1402 | 1637 | 660 | 896 | Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]. |
| COG3250 | LacZ | 6.88e-20 | 1 | 396 | 356 | 739 | Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]. |
| COG1196 | Smc | 2.45e-18 | 1428 | 1645 | 700 | 932 | Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AZU64326.1 | 4.45e-266 | 1 | 1393 | 393 | 1737 |
| BAJ61032.1 | 1.71e-265 | 1 | 1393 | 393 | 1737 |
| QCJ44357.1 | 2.41e-258 | 1 | 1393 | 393 | 1737 |
| AIY82906.1 | 3.18e-231 | 2 | 1464 | 393 | 1859 |
| AQM60758.1 | 8.49e-230 | 2 | 1464 | 393 | 1859 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4YPJ_A | 1.53e-121 | 1 | 475 | 356 | 809 | ChainA, Beta galactosidase [Niallia circulans],4YPJ_B Chain B, Beta galactosidase [Niallia circulans] |
| 7CWD_A | 2.38e-118 | 1 | 473 | 350 | 801 | ChainA, beta-glalactosidase [Niallia circulans],7CWI_A Chain A, beta-galactosidase [Niallia circulans] |
| 7NIT_A | 2.44e-105 | 2 | 888 | 376 | 1293 | ChainA, Beta-galactosidase [Bifidobacterium bifidum],7NIT_B Chain B, Beta-galactosidase [Bifidobacterium bifidum],7NIT_C Chain C, Beta-galactosidase [Bifidobacterium bifidum],7NIT_D Chain D, Beta-galactosidase [Bifidobacterium bifidum],7NIT_E Chain E, Beta-galactosidase [Bifidobacterium bifidum],7NIT_F Chain F, Beta-galactosidase [Bifidobacterium bifidum] |
| 4CU6_A | 9.80e-97 | 1 | 477 | 362 | 848 | Unravellingthe multiple functions of the architecturally intricate Streptococcus pneumoniae beta-galactosidase, BgaA [Streptococcus pneumoniae TIGR4],4CU7_A Unravelling the multiple functions of the architecturally intricate Streptococcus pneumoniae beta-galactosidase, BgaA [Streptococcus pneumoniae TIGR4],4CU8_A Unravelling the multiple functions of the architecturally intricate Streptococcus pneumoniae beta-galactosidase, BgaA [Streptococcus pneumoniae TIGR4] |
| 4CUC_A | 2.43e-96 | 1 | 477 | 362 | 848 | Unravellingthe multiple functions of the architecturally intricate Streptococcus pneumoniae beta-galactosidase, BgaA. [Streptococcus pneumoniae TIGR4] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A7LXS9 | 6.79e-82 | 1 | 464 | 383 | 839 | Beta-galactosidase BoGH2A OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153) OX=411476 GN=BACOVA_02645 PE=1 SV=1 |
| T2KM09 | 1.39e-34 | 1 | 448 | 378 | 795 | Putative beta-glucuronidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22050 PE=2 SV=2 |
| T2KN75 | 4.99e-14 | 35 | 489 | 418 | 826 | Beta-glucuronidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22060 PE=1 SV=1 |
| T2KPJ7 | 4.56e-12 | 37 | 455 | 412 | 807 | Putative beta-glucuronidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_21970 PE=2 SV=1 |
| P77989 | 1.47e-10 | 31 | 418 | 363 | 695 | Beta-galactosidase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=lacZ PE=3 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000032 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |