logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002224_00968

You are here: Home > Sequence: MGYG000002224_00968

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Faecalibacterium sp900540455
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Faecalibacterium; Faecalibacterium sp900540455
CAZyme ID MGYG000002224_00968
CAZy Family PL9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1372 MGYG000002224_5|CGC4 145857.07 4.5623
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002224 2335657 MAG United States North America
Gene Location Start: 92552;  End: 96670  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002224_00968.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 408 816 4.4e-119 0.9733333333333334
CE12 840 1078 1.1e-38 0.9809523809523809

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd01821 Rhamnogalacturan_acetylesterase_like 2.65e-30 840 1080 2 197
Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
pfam13229 Beta_helix 0.004 490 625 2 114
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL00444.1 0.0 4 1338 3 1337
ABX44216.1 2.78e-124 43 814 413 1180
BCJ94249.1 5.28e-123 81 827 444 1191
AII38601.1 3.29e-120 42 841 89 874
QPB61666.1 3.42e-120 42 841 91 876

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 8.37e-34 409 827 16 381
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 5.58e-08 549 698 165 303
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P22751 9.91e-45 81 737 81 660
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A6 2.20e-33 409 714 41 318
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P0C1A7 7.26e-33 409 827 41 406
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000388 0.998752 0.000208 0.000254 0.000207 0.000176

TMHMM  Annotations      download full data without filtering help

start end
13 35