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CAZyme Information: MGYG000002230_01697

You are here: Home > Sequence: MGYG000002230_01697

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus sp900545125
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus; Ruminococcus sp900545125
CAZyme ID MGYG000002230_01697
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
938 102476.54 4.5891
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002230 2337720 MAG United States North America
Gene Location Start: 1507;  End: 4323  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002230_01697.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 264 448 7.9e-53 0.9076923076923077
CBM13 562 704 1.4e-22 0.6968085106382979
CBM13 715 874 2.9e-18 0.7872340425531915

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 4.22e-40 174 511 17 332
Pectate lyase [Carbohydrate transport and metabolism].
pfam00544 Pec_lyase_C 1.08e-20 262 445 30 208
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam14200 RicinB_lectin_2 1.32e-20 645 743 1 89
Ricin-type beta-trefoil lectin domain-like.
smart00656 Amb_all 1.61e-20 260 448 10 186
Amb_all domain.
cd14256 Dockerin_I 5.41e-17 881 936 1 56
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16867.1 0.0 35 934 33 910
CDM68184.1 2.30e-110 39 618 30 584
AYC52826.1 3.41e-93 35 521 28 479
AOP16278.1 3.41e-93 35 521 28 479
QAW38679.1 3.41e-93 35 521 28 479

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 2.08e-11 200 425 14 212
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
5B2H_A 1.38e-06 629 755 163 280
Crystalstructure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum],5B2H_B Crystal structure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 5.61e-61 185 522 33 338
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 3.80e-60 185 522 33 338
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P27027 5.28e-50 187 521 10 304
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 1.03e-42 201 523 13 308
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
Q00645 3.63e-15 193 425 39 234
Pectate lyase plyB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001770 0.237357 0.760412 0.000140 0.000156 0.000145

TMHMM  Annotations      download full data without filtering help

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