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CAZyme Information: MGYG000002256_00696

You are here: Home > Sequence: MGYG000002256_00696

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; UBA3282;
CAZyme ID MGYG000002256_00696
CAZy Family GH0
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
469 MGYG000002256_12|CGC1 51421.38 4.2492
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002256 2755304 MAG Peru South America
Gene Location Start: 13874;  End: 15283  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002256_00696.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01471 PG_binding_1 7.86e-13 393 451 1 54
Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
pfam13620 CarboxypepD_reg 4.46e-07 78 163 13 81
Carboxypeptidase regulatory-like domain.
COG3409 PGRP 1.56e-06 390 451 41 99
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
TIGR02669 SpoIID_LytB 2.38e-05 227 364 106 260
SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General]
COG3409 PGRP 3.42e-05 384 454 117 183
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QRT50293.1 5.78e-193 57 466 6 417
QJU14725.1 1.67e-190 64 466 17 419
QQQ92685.1 1.67e-190 64 466 17 419
ASU27931.1 1.67e-190 64 466 17 419
QEI32542.1 2.31e-190 53 466 13 428

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000051 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002256_00696.