You are browsing environment: HUMAN GUT

CAZyme Information: MGYG000002256_02078

You are here: Home > Sequence: MGYG000002256_02078

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; UBA3282;
CAZyme ID MGYG000002256_02078
CAZy Family GH161
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1021 MGYG000002256_75|CGC1 117361.01 5.1387
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002256 2755304 MAG Peru South America
Gene Location Start: 4756;  End: 7821  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002256_02078.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH161 1 1018 0 0.9858889934148636

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd12651 RRM2_SXL 3.76e-04 249 317 1 68
RNA recognition motif 2 (RRM2) found in Drosophila sex-lethal (SXL) and similar proteins. This subfamily corresponds to the RRM2 of the sex-lethal protein (SXL) which governs sexual differentiation and X chromosome dosage compensation in Drosophila melanogaster. It induces female-specific alternative splicing of the transformer (tra) pre-mRNA by binding to the tra uridine-rich polypyrimidine tract at the non-sex-specific 3' splice site during the sex-determination process. SXL binds also to its own pre-mRNA and promotes female-specific alternative splicing. SXL contains an N-terminal Gly/Asn-rich domain that may be responsible for the protein-protein interaction, and tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), that show high preference to bind single-stranded, uridine-rich target RNA transcripts.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AEN96609.1 0.0 1 1016 10 1035
ABX41251.1 0.0 1 1012 10 1023
CBK73627.1 0.0 3 1018 13 1020
BCN32199.1 0.0 1 1019 10 1039
ADZ85656.1 0.0 1 1016 10 1035

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

0.999933 0.000104 0.000005 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002256_02078.