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CAZyme Information: MGYG000002267_03884

You are here: Home > Sequence: MGYG000002267_03884

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Eisenbergiella sp003478085
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella; Eisenbergiella sp003478085
CAZyme ID MGYG000002267_03884
CAZy Family GH39
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
656 MGYG000002267_19|CGC2 72895.25 5.0967
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002267 7234430 Isolate China Asia
Gene Location Start: 18540;  End: 20510  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002267_03884.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH39 261 578 5.1e-37 0.7424593967517401

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG0794 GutQ 7.72e-43 2 189 12 200
D-arabinose 5-phosphate isomerase GutQ [Carbohydrate transport and metabolism, Cell wall/membrane/envelope biogenesis].
cd05014 SIS_Kpsf 1.07e-35 30 156 2 128
KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
cd05013 SIS_RpiR 2.92e-22 16 153 1 136
RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
PRK10892 PRK10892 1.75e-21 34 181 56 200
arabinose-5-phosphate isomerase KdsD.
PRK11543 gutQ 7.23e-21 34 181 51 195
arabinose-5-phosphate isomerase GutQ.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AVM69820.1 4.95e-222 192 642 4 448
QJD82796.1 2.99e-68 197 595 9 398
QTH43246.1 7.93e-68 200 580 12 382
QJD85864.1 2.53e-67 189 589 2 398
QEL16017.1 9.97e-59 189 575 25 405

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3FXA_A 2.41e-39 2 184 18 201
Crystalstructure of a putative sugar-phosphate isomerase (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 A resolution [Listeria monocytogenes serotype 4b str. F2365],3FXA_B Crystal structure of a putative sugar-phosphate isomerase (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 A resolution [Listeria monocytogenes serotype 4b str. F2365],3FXA_C Crystal structure of a putative sugar-phosphate isomerase (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 A resolution [Listeria monocytogenes serotype 4b str. F2365],3FXA_D Crystal structure of a putative sugar-phosphate isomerase (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 A resolution [Listeria monocytogenes serotype 4b str. F2365]
5Z3K_A 7.58e-26 189 582 7 380
Crystalstructure of glucosidase from Croceicoccus marinus at 1.8 Angstrom resolution [Croceicoccus marinus],5Z3K_B Crystal structure of glucosidase from Croceicoccus marinus at 1.8 Angstrom resolution [Croceicoccus marinus]
3ETN_A 4.15e-19 30 183 61 216
Crystalstructure of putative phosphosugar isomerase involved in capsule formation (YP_209877.1) from Bacteroides fragilis NCTC 9343 at 1.70 A resolution [Bacteroides fragilis NCTC 9343],3ETN_B Crystal structure of putative phosphosugar isomerase involved in capsule formation (YP_209877.1) from Bacteroides fragilis NCTC 9343 at 1.70 A resolution [Bacteroides fragilis NCTC 9343],3ETN_C Crystal structure of putative phosphosugar isomerase involved in capsule formation (YP_209877.1) from Bacteroides fragilis NCTC 9343 at 1.70 A resolution [Bacteroides fragilis NCTC 9343],3ETN_D Crystal structure of putative phosphosugar isomerase involved in capsule formation (YP_209877.1) from Bacteroides fragilis NCTC 9343 at 1.70 A resolution [Bacteroides fragilis NCTC 9343]
5UQI_A 7.33e-16 35 178 50 193
E.coli CFT073 c3406 in complex with A5P [Escherichia coli CFT073],5VHU_A E. coli CFT073 c3406 [Escherichia coli]
2XHZ_A 8.27e-13 34 162 58 183
Probingthe active site of the sugar isomerase domain from E. coli arabinose-5-phosphate isomerase via X-ray crystallography [Escherichia coli],2XHZ_B Probing the active site of the sugar isomerase domain from E. coli arabinose-5-phosphate isomerase via X-ray crystallography [Escherichia coli],2XHZ_C Probing the active site of the sugar isomerase domain from E. coli arabinose-5-phosphate isomerase via X-ray crystallography [Escherichia coli],2XHZ_D Probing the active site of the sugar isomerase domain from E. coli arabinose-5-phosphate isomerase via X-ray crystallography [Escherichia coli]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9HVW0 1.63e-25 24 246 42 248
Arabinose 5-phosphate isomerase KdsD OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=kdsD PE=1 SV=1
O67500 7.73e-24 16 182 30 197
Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1546 PE=3 SV=1
P42502 8.80e-22 2 181 29 209
Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli OX=562 GN=kpsF PE=3 SV=1
Q8FDQ2 2.55e-21 2 181 29 209
Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=kpsF PE=1 SV=2
Q47334 2.55e-21 2 181 29 209
Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli OX=562 GN=kpsF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000060 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002267_03884.