CAZyme Information: MGYG000002282_00157

Basic Information

• Species: Parabacteroides gordonii
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides gordonii
• CAZyme ID: MGYG000002282_00157
• CAZy Family: GH97
• CAZyme Description: Retaining alpha-galactosidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
630	MGYG000002282_1|CGC4	71027.89	5.8818

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002282	6348794	Isolate	China	Asia

• Gene Location: Start: 205157; End: 207049 Strand: +

Full Sequence      

MKKTIVLLAVLLQSVVVCAQTVIPLKSPSEILNAEVRVEGRSVQIGLSEKGDKVVDVKTL
QLDLEEDILAGNWLVINQARKTVNQTWQPVYGERSLVTDRYNELELSLQSDENQKEMTLF
VRLYDEGLAFRYAFDTLDFWNCTLTAEKTQFLFNRDCDTWVTGMAQGAYSKTKLTALQGV
ADRPQVIQVNDRRFVAIGEAALVDYSRMKLGKSEEGIGVQSVLSGKVNLDLAGYRSPWRY
VMVAWHPGQLVQNNDFVLNLNEPNQIQNTSWIRPGEVLREVTLTTAGSLAAIDFAAENNI
AYVEFDAGWYGAEEDTLSDATTVTVDPARSKGPLDLQKVIEYADTKNVGIIVYVNKKALH
KQLDVILPLYKKWGIKGLKFGFVNVGDQYATAWLHQAIRKAAKYELMVDVHDEYRPTGYS
RTYPNLITQEGIRGDEESPALYQTVYTLYNRMICGAGDYTNCFFAERVTEKMGGRAAQLA
KRIAIYSPWQFIFWYDRPYKAPARTGGAGSVESVIKTDAITDFYCSIPTTWDDTRFYERD
MDSYAVVARRSASDWYVSILNAGDKRQVTLPLDMLKSQSRYKATLYYQAPGKKKDVVSVK
EIKLHGQEKLTLDIEGNSGCVLYLTPLSAF

Enzyme Prediction     

No EC number prediction in MGYG000002282_00157.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH97	14	624	1.5e-136	0.9889064976228209

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam14508	GH97_N	2.94e-48	27	263	1	235	Glycosyl-hydrolase 97 N-terminal. This N-terminal domain of glycosyl-hydrolase-97 contributes part of the active site pocket. It is also important for contact with the catalytic and C-terminal domains of the whole.
pfam10566	Glyco_hydro_97	1.45e-47	269	490	2	255	Glycoside hydrolase 97. This domain is the catalytic region of the bacterial glycosyl-hydrolase family 97. This central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, form two additional non-catalytic domains. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
pfam14509	GH97_C	2.47e-19	531	625	1	97	Glycosyl-hydrolase 97 C-terminal, oligomerization. Glycosyl-hydrolase-97 is made up of three tightly linked and highly conserved globular domains. The C-terminal domain is found to be necessary for oligomerization of the whole molecule in order to create the active-site pocket and the Ca++-binding site.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QRY59940.1	1.04e-238	25	627	24	630
QQT29248.1	5.98e-238	25	627	24	630
QQT54718.1	4.52e-237	25	627	24	628
QUT49474.1	3.70e-224	247	628	14	395
QOD61816.1	7.56e-210	23	625	30	635

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5E1Q_A	2.18e-46	27	586	20	614	Mutant(D415G) GH97 alpha-galactosidase in complex with Gal-Lac [Bacteroides thetaiotaomicron VPI-5482],5E1Q_B Mutant (D415G) GH97 alpha-galactosidase in complex with Gal-Lac [Bacteroides thetaiotaomicron VPI-5482]
3A24_A	1.63e-45	27	586	6	600	Crystalstructure of BT1871 retaining glycosidase [Bacteroides thetaiotaomicron],3A24_B Crystal structure of BT1871 retaining glycosidase [Bacteroides thetaiotaomicron]
3WFA_A	4.36e-44	82	619	85	698	Catalyticrole of the calcium ion in GH97 inverting glycoside hydrolase [Bacteroides thetaiotaomicron],3WFA_B Catalytic role of the calcium ion in GH97 inverting glycoside hydrolase [Bacteroides thetaiotaomicron]
2JKA_A	4.40e-44	82	619	94	707	Nativestructure of a family 97 alpha-glucosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482],2JKA_B Native structure of a family 97 alpha-glucosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482],2JKE_A Structure of a family 97 alpha-glucosidase from Bacteroides thetaiotaomicron in complex with deoxynojirimycin [Bacteroides thetaiotaomicron VPI-5482],2JKE_B Structure of a family 97 alpha-glucosidase from Bacteroides thetaiotaomicron in complex with deoxynojirimycin [Bacteroides thetaiotaomicron VPI-5482],2JKP_A Structure of a family 97 alpha-glucosidase from Bacteroides thetaiotaomicron in complex with castanospermine [Bacteroides thetaiotaomicron VPI-5482],2JKP_B Structure of a family 97 alpha-glucosidase from Bacteroides thetaiotaomicron in complex with castanospermine [Bacteroides thetaiotaomicron VPI-5482]
2D73_A	4.78e-44	82	619	105	718	CrystalStructure Analysis of SusB [Bacteroides thetaiotaomicron VPI-5482],2D73_B Crystal Structure Analysis of SusB [Bacteroides thetaiotaomicron VPI-5482],2ZQ0_A Crystal structure of SusB complexed with acarbose [Bacteroides thetaiotaomicron],2ZQ0_B Crystal structure of SusB complexed with acarbose [Bacteroides thetaiotaomicron]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q8A6L0	3.74e-46	1	586	1	621	Retaining alpha-galactosidase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=BT_1871 PE=1 SV=1
G8JZS4	2.62e-43	82	619	105	718	Glucan 1,4-alpha-glucosidase SusB OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=susB PE=1 SV=1
D7CFN7	1.92e-32	42	572	58	574	Probable retaining alpha-galactosidase OS=Streptomyces bingchenggensis (strain BCW-1) OX=749414 GN=SBI_01652 PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000315	0.998928	0.000252	0.000151	0.000158	0.000149

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002282_00157.