CAZyme Information: MGYG000002282_04888

Basic Information

• Species: Parabacteroides gordonii
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides gordonii
• CAZyme ID: MGYG000002282_04888
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
999		111650.04	8.9881

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002282	6348794	Isolate	China	Asia

• Gene Location: Start: 54608; End: 57607 Strand: +

Full Sequence      

MRKILTILFCAVCLLTAKAQTIPNMYRNVDQAKMNHWVDSVFDAMSYDERIGQLFMVIAE
PKSDNRNMQRLLRYVNEIKIGGILFHKGNPVTQAEVTNRLQKASRVPMFVSLDGEWGLSM
RLSGTTRFPKNMMLGAIEDNKLITEYGKEVARQCKELGIQINFAPDIDVNSNTDNPVIGL
RSFGENPVAVADKGLAYARGLEGEGIISVSKHFPGHGDTSEDSHNTLPSVHHDRARLDSV
ELYPFRRYIYDGYAGVMTGHLYVPALDKTRNLPSSLSRPIVTGLLKEELGFRGLCFTDAL
AMKGATTSKLDNPSVKALLAGNDILLAPAAPINDFTAVKEAIDEGILNIEDIEAKCIKIL
QYKYITGLNKYSPIEVKGLSKRLNSPHAAWLAAKLNAEAITLLKNEADMIPLRQLDKKKI
AALSIGSPVGNDFQEMLGRYDSVACFSISRSSTAAQVQQVYRQLEKYDVIICSIHTVRIP
ESQLLRTLASKKELVYAFFTLPYFCKDYKNSIQKAKAVVMGYEATPLAQEYAAQLIFGGI
PAKGKLPVTIPGLYYAGTGIFTEKTRLGYHEPEEAGANPIRLDVIDSIVEEGLEGKAYPG
CQVLVAKDGMVIYDKSFGYFDYSERQPVRENSVYDLASASKAAGTLLAVMKAYDEKKFTL
NNKISEYIPELKDSNKKDLNIKEMLYHQSGVVSTINFYLNAIDKDSYKGSLYSREKNATH
PVRFDAKTFVRNDFKYLPDLVSDKKKPGFTTEVARGFYLHDSFKDSIMQEIKDSRLGTRG
KYVYSCVNFIMLKMMVENQMKQPMDQLLHNDFYSRLGARHTTYNPLKVMDTLQIVPTEND
QFVRRQLIRGYVHDEAAAFQGGVSGNAGLFSNANDLAKVLQLFLNQGKYGNEQYLSPETC
RLFTQSKSPTSRRGLGFDKPAVGSHKGSPCSSLTPPSVYGHTGFTGTCFWVDPTNQLLYI
FLCNRVNPSRANSKLSALDIRTRIQDAIYKSIDRKSQKD

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	101	326	2.8e-54	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	1.08e-71	45	424	1	361	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	1.16e-69	48	360	3	314	Glycosyl hydrolase family 3 N terminal domain.
PRK03642	PRK03642	6.48e-63	570	992	28	431	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	5.76e-40	585	968	1	311	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	1.23e-34	572	971	28	369	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUT21701.1	0.0	1	999	1	998
BBK92319.1	0.0	1	999	1	998
QIX64335.1	0.0	1	999	1	998
QJE31090.1	0.0	1	999	1	998
QUT93956.1	0.0	1	999	1	998

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	4.30e-61	44	550	10	531	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3BMX_A	5.70e-61	39	569	36	632	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	1.65e-60	39	569	10	606	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	2.96e-60	39	569	40	636	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3SQL_A	8.32e-51	62	363	44	346	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	3.12e-60	39	569	36	632	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	4.59e-49	71	413	55	426	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
P77619	5.81e-44	572	965	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	1.07e-43	572	965	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
B5RCU8	7.93e-41	572	976	30	406	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=yfeW PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000229	0.999105	0.000193	0.000154	0.000153	0.000141

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002282_04888.