logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002292_00768

You are here: Home > Sequence: MGYG000002292_00768

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species TF01-11 sp003529475
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; TF01-11; TF01-11 sp003529475
CAZyme ID MGYG000002292_00768
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2153 MGYG000002292_3|CGC1 244855.35 4.7302
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002292 3137432 Isolate China Asia
Gene Location Start: 28789;  End: 35250  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002292_00768.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4646 COG4646 1.35e-75 1137 1658 1 540
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
COG4646 COG4646 5.92e-27 1753 1988 397 635
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
COG0827 YtxK 4.40e-09 973 1124 207 348
Adenine-specific DNA methylase [Replication, recombination and repair].
smart00487 DEXDc 3.93e-08 1602 1705 7 110
DEAD-like helicases superfamily.
cd18011 DEXDc_RapA 2.71e-07 1604 1663 1 62
DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ASV45029.1 4.47e-299 835 2135 1542 2917
QIW86704.1 2.83e-298 835 2135 1610 2985
QIW86628.1 2.83e-298 835 2135 1610 2985
AEY69616.1 1.26e-286 835 2135 1683 3061
AXF51455.1 8.22e-286 835 2135 1776 3154

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q71TF8 6.21e-32 878 1958 68 1225
Defense against restriction protein B OS=Escherichia phage P1 OX=2886926 GN=darB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000061 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002292_00768.