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CAZyme Information: MGYG000002295_00129

You are here: Home > Sequence: MGYG000002295_00129

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_C callidus
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C callidus
CAZyme ID MGYG000002295_00129
CAZy Family CBM4
CAZyme Description Cellulose 1,4-beta-cellobiosidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1058 MGYG000002295_1|CGC2 115743.8 4.3576
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002295 2957494 Isolate China Asia
Gene Location Start: 132862;  End: 136038  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.4 3.2.1.78

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH9 359 910 4e-102 0.9880382775119617
CBM4 42 214 1.5e-19 0.9682539682539683

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00759 Glyco_hydro_9 5.12e-74 360 910 2 374
Glycosyl hydrolase family 9.
pfam02927 CelD_N 8.36e-22 259 342 3 83
Cellulase N-terminal ig-like domain.
cd02850 E_set_Cellulase_N 2.22e-21 261 347 4 86
N-terminal Early set domain associated with the catalytic domain of cellulase. E or "early" set domains are associated with the catalytic domain of cellulases at the N-terminal end. Cellulases are O-glycosyl hydrolases (GHs) that hydrolyze beta 1-4 glucosidic bonds in cellulose. They are usually categorized into either exoglucanases, which sequentially release terminal sugar units from the cellulose chain, or endoglucanases, which also attack the chain internally. The N-terminal domain of cellulase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others.
cd14256 Dockerin_I 1.01e-10 987 1044 1 57
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.
PLN02345 PLN02345 1.31e-07 553 864 147 428
endoglucanase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL17684.1 6.10e-249 1 1023 1 932
BAH56283.1 1.21e-217 35 914 170 1007
ADU21576.1 1.91e-209 29 912 22 798
AAR01216.1 4.57e-209 13 917 4 902
CAS03458.1 2.86e-208 13 917 8 906

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1UT9_A 1.72e-128 259 914 7 605
ChainA, CELLULOSE 1,4-BETA-CELLOBIOSIDASE [Acetivibrio thermocellus]
1RQ5_A 4.86e-128 259 916 7 607
ChainA, Cellobiohydrolase [Acetivibrio thermocellus]
6DHT_A 1.07e-57 259 914 18 565
Bacteroidesovatus GH9 Bacova_02649 [Bacteroides ovatus ATCC 8483]
3X17_A 8.57e-56 261 911 20 554
Crystalstructure of metagenome-derived glycoside hydrolase family 9 endoglucanase [uncultured bacterium],3X17_B Crystal structure of metagenome-derived glycoside hydrolase family 9 endoglucanase [uncultured bacterium]
5U0H_A 2.06e-37 268 915 3 542
Crystalstructure of GH family 9 endoglucanase J30 [Thermobacillus composti KWC4]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A3DCH1 3.32e-146 36 915 38 813
Cellulose 1,4-beta-cellobiosidase OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=celK PE=3 SV=1
P0C2S1 4.65e-146 36 915 38 813
Cellulose 1,4-beta-cellobiosidase OS=Acetivibrio thermocellus OX=1515 GN=celK PE=1 SV=1
Q05156 2.85e-101 26 916 17 745
Cellulase 1 OS=Streptomyces reticuli OX=1926 GN=cel1 PE=1 SV=1
P14090 9.11e-100 254 930 333 932
Endoglucanase C OS=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) OX=590998 GN=cenC PE=1 SV=2
P10476 4.73e-96 261 917 39 602
Endoglucanase A OS=Cellvibrio japonicus (strain Ueda107) OX=498211 GN=celA PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001333 0.997073 0.000232 0.000844 0.000261 0.000219

TMHMM  Annotations      download full data without filtering help

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