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CAZyme Information: MGYG000002296_00543

You are here: Home > Sequence: MGYG000002296_00543

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Streptococcus koreensis
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus koreensis
CAZyme ID MGYG000002296_00543
CAZy Family GT0
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
586 MGYG000002296_1|CGC8 69568.53 6.2987
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002296 1965791 Isolate China Asia
Gene Location Start: 567276;  End: 569036  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002296_00543.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3754 RgpF 0.0 1 583 1 593
Lipopolysaccharide biosynthesis protein [Cell wall/membrane/envelope biogenesis].
pfam05045 RgpF 0.0 34 516 1 501
Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
SQF25488.1 9.09e-248 1 580 1 577
QBS00304.1 1.83e-247 1 580 1 577
QBS00073.1 1.83e-247 1 580 1 577
QBS00405.1 1.83e-247 1 580 1 577
QHD71849.1 1.83e-247 1 580 1 577

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
F7YJG6 6.31e-07 57 216 81 231
Virulence protein VirA OS=Vibrio anguillarum (strain ATCC 68554 / 775) OX=882102 GN=virA PE=4 SV=2
P0DJH1 6.31e-07 57 216 81 231
Virulence protein VirA OS=Vibrio anguillarum OX=55601 GN=virA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000077 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002296_00543.