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CAZyme Information: MGYG000002296_01641

You are here: Home > Sequence: MGYG000002296_01641

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Streptococcus koreensis
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus koreensis
CAZyme ID MGYG000002296_01641
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
390 MGYG000002296_4|CGC1 40919.38 3.9475
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002296 1965791 Isolate China Asia
Gene Location Start: 58299;  End: 59471  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002296_01641.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd00118 LysM 3.03e-10 51 94 1 44
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
smart00257 LysM 7.14e-10 52 94 1 43
Lysin motif.
pfam01476 LysM 1.01e-08 53 94 1 41
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
PRK06347 PRK06347 4.36e-04 45 155 400 501
1,4-beta-N-acetylmuramoylhydrolase.
PRK10783 mltD 0.002 38 94 325 386
membrane-bound lytic murein transglycosylase D; Provisional

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AMP67560.1 3.74e-211 1 390 1 390
AYF93580.1 1.07e-210 1 388 1 388
AGY40650.1 1.08e-208 1 388 1 380
VEE18805.1 8.33e-208 1 390 1 390
VED66339.1 8.33e-208 1 390 1 390

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
D4ATA2 3.07e-06 323 381 187 245
Uncharacterized secreted protein ARB_07466 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_07466 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000243 0.999069 0.000184 0.000184 0.000164 0.000140

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002296_01641.