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CAZyme Information: MGYG000002311_03359

You are here: Home > Sequence: MGYG000002311_03359

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Vibrio cholerae
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Vibrionaceae; Vibrio; Vibrio cholerae
CAZyme ID MGYG000002311_03359
CAZy Family CBM50
CAZyme Description putative L,D-transpeptidase YcfS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
306 MGYG000002311_2|CGC6 34094.55 8.3956
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002311 4089020 Isolate Haiti North America
Gene Location Start: 698149;  End: 699069  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002311_03359.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK10260 PRK10260 6.82e-90 17 296 21 305
L,D-transpeptidase; Provisional
PRK10190 PRK10190 1.50e-79 11 299 12 305
L,D-transpeptidase; Provisional
COG1376 ErfK 3.05e-52 1 233 2 232
Lipoprotein-anchoring transpeptidase ErfK/SrfK [Cell wall/membrane/envelope biogenesis].
cd16913 YkuD_like 2.84e-38 95 230 2 121
L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.
pfam17969 Ldt_C 4.21e-25 233 296 1 67
L,D-transpeptidase C-terminal domain. This is the C-terminal domain found in d-transpeptidases (Ldt) homologues from E.coli. Three of these enzymes (YbiS, ErfK, YcfS) have been shown to cross-link Braun's lipoprotein to the peptidoglycan (PG), while the other two (YnhG, YcbB) form direct meso-diaminopimelate (DAP-DAP, or 3-3) cross-links within the PG. Family members include erfK (ldtA), ybiS (ldtB), ycfS (ldtC), and ynhG (ldtE).

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUY00823.1 2.80e-228 1 306 1 306
QPC55488.1 2.80e-228 1 306 1 306
QTV10206.1 2.80e-228 1 306 1 306
QLK92159.1 2.80e-228 1 306 1 306
QTV04013.1 2.80e-228 1 306 1 306

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4LZH_A 1.01e-69 19 296 2 284
ChainA, L,D-transpeptidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P75954 4.45e-90 2 296 10 310
Probable L,D-transpeptidase YcfS OS=Escherichia coli (strain K12) OX=83333 GN=ycfS PE=1 SV=1
P76193 1.14e-77 11 296 17 302
Probable L,D-transpeptidase YnhG OS=Escherichia coli (strain K12) OX=83333 GN=ynhG PE=1 SV=1
P0AAX8 9.09e-73 19 296 23 305
Probable L,D-transpeptidase YbiS OS=Escherichia coli (strain K12) OX=83333 GN=ybiS PE=1 SV=1
P0AAX9 9.09e-73 19 296 23 305
Probable L,D-transpeptidase YbiS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ybiS PE=3 SV=1
P0AAY0 9.09e-73 19 296 23 305
Probable L,D-transpeptidase YbiS OS=Escherichia coli O157:H7 OX=83334 GN=ybiS PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000287 0.999005 0.000194 0.000150 0.000159 0.000152

TMHMM  Annotations      download full data without filtering help

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