dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000002337_01327

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Basic Information help

Species

Staphylococcus aureus

Lineage

Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus

CAZyme ID

MGYG000002337_01327

CAZy Family

CBM50

CAZyme Description

Elastin-binding protein EbpS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
486	MGYG000002337_1\|CGC16	53211.45	6.3315

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002337	2749621	Isolate	not provided	not provided

Gene Location

Start: 1474552; End: 1476012 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000002337_01327.

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
NF033598	elast_bind_EbpS	9.25e-59	2	486	1	466	elastin-binding protein EbpS. The elastin-binding protein EbpS is an adhesin described in Staphylococcus aureus, with orthologs found in many additional staphylococcal species. EbpS is a membrane protein that lacks an N-terminal signal peptide region, has extensive regions low-complexity sequence rich in Asn and Gln, and has a C-terminal LysM domain.
cd00118	LysM	1.16e-05	437	485	1	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam01476	LysM	4.57e-05	439	486	1	43	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
smart00257	LysM	0.004	439	485	2	44	Lysin motif.
PTZ00342	PTZ00342	0.009	322	401	198	277	acyl-CoA synthetase; Provisional

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
SQE64078.1	5.30e-224	1	486	1	486
QDX08810.1	5.30e-224	1	486	1	486
BAS51576.1	5.30e-224	1	486	1	486
VDZ92751.1	5.30e-224	1	486	1	486
AWQ31350.1	5.30e-224	1	486	1	486

PDB Hits help

has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q99U09	4.98e-223	1	486	1	486	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=ebpS PE=3 SV=3
Q7A5I6	4.98e-223	1	486	1	486	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain N315) OX=158879 GN=ebpS PE=1 SV=3
Q53630	8.18e-222	1	486	1	486	Elastin-binding protein EbpS OS=Staphylococcus aureus OX=1280 GN=ebpS PE=1 SV=4
Q6GGT1	8.18e-222	1	486	1	486	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=ebpS PE=3 SV=3
Q6G983	8.94e-219	1	486	1	486	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=ebpS PE=3 SV=3

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000025	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM Annotations download full data without filtering help

start	end
320	342