CAZyme Information: MGYG000002338_00899

Basic Information

• Species: Staphylococcus haemolyticus
• Lineage: Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus haemolyticus
• CAZyme ID: MGYG000002338_00899
• CAZy Family: GH0
• CAZyme Description: HTH-type transcriptional activator RhaS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
754	MGYG000002338_14|CGC1	89370.83	6.7248

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002338	2548117	Isolate	Russia	Europe

• Gene Location: Start: 23267; End: 25531 Strand: -

Full Sequence      

MNTNYEITFDTKKEDIASDYLSLNLILKGNVTCQSENQNKHYHVGDLILINSYQNFLILE
DSDVSYMSLRLSNNYFSHYIEDKNIYFHFEEVSKKIHDDIKTLLAKIGITYLRKGKFHQL
HMDQMMIQLIEMLVKFIPYQSRQELIHEHNKDDVFASLASEFINQHFMERIGLDDLSDYI
NLSSSYTSRLFTKKLGTSFNSYLNKVRTRNAEHDLKYSDISITDIAMKNGFSNSTSLAKH
FKLWYHMTPGDYRKEFQVKDLNQLKMKPLNKQSIKRYIQYLSSYVNNQMDVVIHSAEPQK
EIDIQLEDRLGYLNKYNHIVQIGSIVNMRVHRYREQILEVKDRVGLDTVLVQDLVNDTSW
REHVVASDEIIPHSHQYMTLDECLLFLMNHQIHLSIRLRPPHSAIAFQAYCGTWVQILKH
FINMTTHSSRMQLSVIIDAIDLKQYTQLYEFFNRYISNVKFIVNYQDFSKQKNNLKLLFK
EHPEKVNMLAFEANQNDVVNLEVSEDIQYQYAKNHINETVEALVEWLPKKQKDMPLMLLN
WNTLTGNSNLTNGEYFRAGIIFKQLLDINEKVCTVGYWLNYELHQKYGVMNEHQLMGIDL
YHQFDGKRPAFFTSNFFRMLQNNVRFRNEECMVVGDDTHLQIVVWDADHYNPYYTISEQP
NVMEKRNFKIEINQLQSGLYKIKHYTLDKENGALYRVWQQHNTTYGMDQETIDYVNRISY
PKLDIAEVEVEETLTYHLKVMTNSIHIIEVNKYV

Enzyme Prediction     

No EC number prediction in MGYG000002338_00899.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3664	XynB	7.27e-53	368	754	43	428	Beta-xylosidase [Carbohydrate transport and metabolism].
COG2207	AraC	1.12e-24	159	257	25	123	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342	HTH_ARAC	5.98e-23	170	253	1	84	helix_turn_helix, arabinose operon control protein.
pfam12833	HTH_18	1.88e-20	176	254	1	80	Helix-turn-helix domain.
COG4753	YesN	3.96e-17	79	257	293	475	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QQQ84690.1	0.0	1	754	1	754
QFU27706.1	0.0	1	754	1	754
QFR05561.1	0.0	1	754	1	754
QQQ82361.1	0.0	1	754	1	754
QCY37521.1	0.0	1	754	1	754

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7BEF_G	1.73e-07	161	255	30	124	ChainG, Transcriptional activator RamA [Klebsiella pneumoniae],7BEG_G Chain G, Transcriptional activator RamA [Klebsiella pneumoniae]
6SWI_A	1.92e-07	159	254	10	106	TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
3LSG_A	9.82e-06	173	253	22	102	Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q7A882	1.81e-132	21	753	23	742	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q5HJR8	1.81e-132	1	753	1	742	Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q99XB1	1.81e-132	21	753	23	742	Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q6GKK1	1.40e-131	21	753	23	742	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q6GD21	1.97e-131	21	753	23	742	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000075	0.000001	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002338_00899.