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CAZyme Information: MGYG000002340_02040

You are here: Home > Sequence: MGYG000002340_02040

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Intestinimonas butyriciproducens
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; Intestinimonas; Intestinimonas butyriciproducens
CAZyme ID MGYG000002340_02040
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
283 MGYG000002340_1|CGC13 30212.16 4.4118
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002340 3376471 Isolate not provided not provided
Gene Location Start: 2106131;  End: 2106982  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002340_02040.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK11198 PRK11198 1.40e-14 221 281 88 146
LysM domain/BON superfamily protein; Provisional
COG1652 XkdP 1.41e-08 217 281 197 262
Nucleoid-associated protein YgaU, contains BON and LysM domains [Function unknown].
PRK10783 mltD 1.43e-07 147 262 328 437
membrane-bound lytic murein transglycosylase D; Provisional
cd00118 LysM 1.47e-07 233 280 3 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam01476 LysM 1.23e-06 233 281 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ALP94523.1 8.47e-182 1 283 1 283
AEY67170.1 6.97e-22 168 280 203 317
AFM00140.1 1.37e-21 168 280 206 319
CDX00994.1 1.86e-21 168 280 228 341
BAE82858.1 2.10e-21 168 280 238 351

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5FIM_A 3.25e-08 227 281 93 147
Thestructure of Kbp.K from E. coli [Escherichia coli],7PVC_A Chain A, Potassium binding protein Kbp [Escherichia coli K-12]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0ADE6 1.55e-07 227 281 93 147
Potassium binding protein Kbp OS=Escherichia coli (strain K12) OX=83333 GN=kbp PE=1 SV=2
P0ADE7 1.55e-07 227 281 93 147
Potassium binding protein Kbp OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=kbp PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000471 0.998637 0.000210 0.000247 0.000216 0.000194

TMHMM  Annotations      download full data without filtering help

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