logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002346_02118

You are here: Home > Sequence: MGYG000002346_02118

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Acinetobacter pittii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter pittii
CAZyme ID MGYG000002346_02118
CAZy Family CBM50
CAZyme Description putative protein YgaU
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
157 16849.28 4.9658
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002346 3962855 Isolate United States North America
Gene Location Start: 41652;  End: 42125  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002346_02118.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK11198 PRK11198 1.98e-74 1 157 1 147
LysM domain/BON superfamily protein; Provisional
COG1652 XkdP 3.88e-16 105 157 210 263
Nucleoid-associated protein YgaU, contains BON and LysM domains [Function unknown].
cd00118 LysM 3.64e-10 106 155 1 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
NF033163 lipo_LipL71 1.26e-08 106 156 405 460
lipoprotein LipL71. Members of this family are lipoprotein LipL71, also known as LruA, as described in Leptospira interrogans but found broadly in the genus Leptospira. Close homologs that are not lipoproteins by sequence are likely defective in their reported coding region.
smart00257 LysM 1.78e-08 107 155 1 44
Lysin motif.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AZB95204.1 5.45e-109 1 157 1 157
BCZ11489.1 5.45e-109 1 157 1 157
AUT35331.1 5.45e-109 1 157 1 157
QEI29100.1 5.45e-109 1 157 1 157
AMO41535.1 5.45e-109 1 157 1 157

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5FIM_A 9.28e-39 1 157 1 148
Thestructure of Kbp.K from E. coli [Escherichia coli],7PVC_A Chain A, Potassium binding protein Kbp [Escherichia coli K-12]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0ADE6 4.02e-38 1 157 1 148
Potassium binding protein Kbp OS=Escherichia coli (strain K12) OX=83333 GN=kbp PE=1 SV=2
P0ADE7 4.02e-38 1 157 1 148
Potassium binding protein Kbp OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=kbp PE=3 SV=2
Q9RVY3 8.62e-08 35 156 123 252
Uncharacterized protein DR_0888 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=DR_0888 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000010 0.000039 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002346_02118.