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CAZyme Information: MGYG000002351_05779
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Klebsiella_A michiganensis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella_A; Klebsiella_A michiganensis | |||||||||||
| CAZyme ID | MGYG000002351_05779 | |||||||||||
| CAZy Family | PL9 | |||||||||||
| CAZyme Description | Pectate disaccharide-lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 6113609; End: 6115780 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL9 | 378 | 721 | 3.7e-106 | 0.9706666666666667 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam13229 | Beta_helix | 2.44e-06 | 457 | 611 | 19 | 142 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
| pfam14592 | Chondroitinas_B | 4.03e-05 | 404 | 555 | 9 | 143 | Chondroitinase B. This family includes chondroitinases. These enzymes cleave the glycosaminoglycan dermatan sulfate. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| APM32370.1 | 0.0 | 1 | 723 | 1 | 723 |
| QTH51378.1 | 0.0 | 1 | 723 | 1 | 723 |
| QZG78597.1 | 0.0 | 1 | 723 | 1 | 723 |
| AUV89578.1 | 0.0 | 1 | 723 | 1 | 723 |
| AID93053.1 | 0.0 | 1 | 723 | 1 | 723 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1RU4_A | 7.48e-31 | 383 | 657 | 18 | 316 | ChainA, Pectate lyase [Dickeya chrysanthemi] |
| 5OLQ_A | 2.54e-12 | 379 | 662 | 2 | 357 | Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P22751 | 2.30e-292 | 28 | 679 | 34 | 688 | Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1 |
| P0C1A6 | 5.51e-31 | 383 | 673 | 43 | 351 | Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1 |
| P0C1A7 | 6.07e-30 | 383 | 657 | 43 | 341 | Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000318 | 0.998886 | 0.000279 | 0.000176 | 0.000168 | 0.000149 |