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CAZyme Information: MGYG000002357_01428
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Bacillus licheniformis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus licheniformis | |||||||||||
| CAZyme ID | MGYG000002357_01428 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | Pectate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1411322; End: 1412629 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 142 | 351 | 3.9e-99 | 0.9953051643192489 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3866 | PelB | 4.01e-72 | 24 | 434 | 23 | 344 | Pectate lyase [Carbohydrate transport and metabolism]. |
| smart00656 | Amb_all | 9.20e-61 | 152 | 354 | 12 | 189 | Amb_all domain. |
| pfam00544 | Pec_lyase_C | 5.40e-45 | 144 | 351 | 22 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CBC41495.1 | 0.0 | 1 | 435 | 1 | 435 |
| QGI42955.1 | 0.0 | 1 | 435 | 1 | 435 |
| QNT71686.1 | 0.0 | 1 | 435 | 1 | 435 |
| CAW70631.1 | 0.0 | 1 | 435 | 1 | 435 |
| VEH77617.1 | 0.0 | 1 | 435 | 1 | 435 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1VBL_A | 1.86e-166 | 26 | 434 | 2 | 415 | Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47] |
| 1BN8_A | 3.31e-158 | 8 | 434 | 4 | 419 | BacillusSubtilis Pectate Lyase [Bacillus subtilis] |
| 2BSP_A | 9.43e-158 | 8 | 434 | 4 | 419 | ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis] |
| 5AMV_A | 4.27e-156 | 25 | 434 | 1 | 398 | Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168] |
| 2NZM_A | 3.47e-155 | 25 | 434 | 1 | 398 | ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P39116 | 1.81e-157 | 8 | 434 | 4 | 419 | Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1 |
| Q56806 | 1.29e-78 | 10 | 434 | 15 | 377 | Pectate lyase OS=Xanthomonas campestris pv. malvacearum OX=86040 PE=3 SV=1 |
| Q51915 | 2.80e-78 | 9 | 434 | 16 | 380 | Pectate lyase OS=Pseudomonas marginalis OX=298 GN=pel PE=1 SV=1 |
| Q59671 | 2.80e-78 | 9 | 434 | 16 | 380 | Pectate lyase OS=Pseudomonas fluorescens OX=294 GN=pel PE=3 SV=1 |
| Q60140 | 9.61e-76 | 15 | 434 | 20 | 379 | Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000243 | 0.999113 | 0.000163 | 0.000182 | 0.000160 | 0.000144 |