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CAZyme Information: MGYG000002360_01751

You are here: Home > Sequence: MGYG000002360_01751

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lactobacillus hominis
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus hominis
CAZyme ID MGYG000002360_01751
CAZy Family GH23
CAZyme Description Chromosome partition protein Smc
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1823 198211.42 10.4662
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002360 1926186 Isolate France Europe
Gene Location Start: 4907;  End: 10378  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002360_01751.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd13402 LT_TF-like 2.33e-31 1615 1730 1 116
lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
pfam00877 NLPC_P60 5.87e-24 1434 1527 1 94
NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.
COG0791 Spr 4.26e-21 1433 1507 86 167
Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis].
COG5283 COG5283 1.20e-20 12 1350 11 1116
Phage-related tail protein [Mobilome: prophages, transposons].
NF033741 NlpC_p60_RipA 1.55e-16 1434 1505 340 425
NlpC/P60 family peptidoglycan endopeptidase RipA.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QXL48446.1 0.0 1 1809 1 1802
ART97440.1 0.0 1 1809 1 1803
QTP20241.1 0.0 1 1809 1 1803
CAB52530.1 0.0 332 1809 1 1472
VEF35182.1 0.0 1 1809 1 1801

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7CFL_A 1.35e-15 1434 1526 26 124
ChainA, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_B Chain B, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_C Chain C, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_D Chain D, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile]
2XIV_A 9.73e-13 1434 1521 92 187
Structureof Rv1477, hypothetical invasion protein of Mycobacterium tuberculosis [Mycobacterium tuberculosis H37Rv]
3NE0_A 1.07e-12 1434 1521 97 192
Structureand functional regulation of RipA, a mycobacterial enzyme essential for daughter cell separation [Mycobacterium tuberculosis H37Rv]
3PBC_A 1.07e-12 1434 1521 97 192
ChainA, Invasion Protein [Mycobacterium tuberculosis]
4Q4T_A 9.93e-12 1434 1521 355 450
Structureof the Resuscitation Promoting Factor Interacting protein RipA mutated at E444 [Mycobacterium tuberculosis H37Rv]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8NNK6 3.29e-11 1434 1514 110 190
Probable endopeptidase Cgl2188 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=Cgl2188 PE=3 SV=1
A4QFQ3 3.42e-11 1434 1514 112 192
Probable endopeptidase cgR_2070 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=cgR_2070 PE=1 SV=1
O53168 7.18e-11 1434 1521 355 450
Peptidoglycan endopeptidase RipA OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ripA PE=1 SV=1
Q01835 2.44e-10 1427 1511 401 487
Probable endopeptidase p60 OS=Listeria grayi OX=1641 GN=iap PE=3 SV=1
P9WHU5 2.81e-09 1434 1510 124 214
Peptidoglycan endopeptidase RipB OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ripB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000073 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002360_01751.