CAZyme Information: MGYG000002363_04759

Basic Information

• Species: Raoultella ornithinolytica
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Raoultella; Raoultella ornithinolytica
• CAZyme ID: MGYG000002363_04759
• CAZy Family: GT9
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
359		41322.17	9.6975

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002363	5677722	Isolate	United Republic of Tanzania	Africa

• Gene Location: Start: 329840; End: 330919 Strand: -

Full Sequence      

MRILKQLTRKKNAFFRDIKFNLINFRYRNKAERQPFNPAQVKRILLLRLDDKVGDMVVTT
GCARLLAEHGYKVSVLTGPVCMQILAGSIFLENVYLYKPRMSLAALRALNFDAVIDFDDV
KTYERFKFLSDLRAPCVIGFNKEKYKLYDQSITFYDSKSHISARYKQVVKLFGVRDEHYH
YHVPGDIRERQRVEKLLATESDRQLCVAINPFTASTDKDFCRHQVAALIERLRQLPYKVS
VVMVGRSEKIRQLGLDMALYLADSNINSAVEVIRCCDLVITADTSIVHIARVFDKPMVAV
YNKRKLKDTGLPGYTIWAPGYAKARQIVCEEENVADVPIDAIWPMIQEQADSLVATRLR

Enzyme Prediction     

No EC number prediction in MGYG000002363_04759.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GT9	104	310	1.8e-26	0.8266666666666667

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG0859	RfaF	6.16e-29	41	348	1	328	ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis].
cd03789	GT9_LPS_heptosyltransferase	7.51e-18	43	301	1	222	lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
pfam01075	Glyco_transf_9	4.08e-07	100	301	1	209	Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
TIGR02195	heptsyl_trn_II	1.29e-05	226	301	197	277	lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK10916	PRK10916	7.18e-04	247	301	236	287	ADP-heptose--LPS heptosyltransferase RfaF.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AOO58417.1	5.07e-260	1	359	1	359
QLJ44396.1	5.07e-260	1	359	1	359
QQQ06479.1	5.26e-260	1	359	1	359
VEC84542.1	5.26e-260	1	359	1	359
AGJ88563.1	5.26e-260	1	359	1	359

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P27242	2.53e-26	9	342	8	344	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase OS=Escherichia coli (strain K12) OX=83333 GN=waaU PE=4 SV=2

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000067	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002363_04759.