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CAZyme Information: MGYG000002368_01411

You are here: Home > Sequence: MGYG000002368_01411

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Vibrio metoecus
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Vibrionaceae; Vibrio; Vibrio metoecus
CAZyme ID MGYG000002368_01411
CAZy Family GH19
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
962 MGYG000002368_11|CGC1 106528.58 6.6326
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002368 3946363 Isolate United States North America
Gene Location Start: 13445;  End: 16333  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002368_01411.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3501 VgrG 0.0 3 549 11 540
Uncharacterized conserved protein, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only].
TIGR03361 VI_Rhs_Vgr 0.0 6 526 1 513
type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.
TIGR01646 vgr_GE 3.97e-139 18 508 1 483
Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.
pfam05954 Phage_GPD 2.46e-82 26 336 1 305
Phage late control gene D protein (GPD). This family includes a number of phage late control gene D proteins and related bacterial sequences. This family also includes Bacteriophage Mu P proteins and related sequences.
COG3179 COG3179 9.53e-27 815 953 8 134
Predicted chitinase [General function prediction only].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATD28782.1 0.0 1 959 1 959
AMG01858.1 0.0 1 959 1 959
AOW84609.1 0.0 1 959 1 959
AHX36826.1 0.0 1 808 1 808
QXC56125.1 0.0 1 808 1 808

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7Q5P_A 1.11e-93 42 528 36 534
ChainA, Type VI secretion protein VgrG [Pseudomonas protegens Pf-5],7Q5P_B Chain B, Type VI secretion protein VgrG [Pseudomonas protegens Pf-5],7Q5P_C Chain C, Type VI secretion protein VgrG [Pseudomonas protegens Pf-5]
4MTK_A 7.61e-92 3 523 2 518
Crystalstructure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_B Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_C Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_D Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_E Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_F Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],6H3L_A Structure of VgrG1 in the Type VI secretion 'pre-firing' VgrG1-Tse6-EagT6-EF-Tu-Tsi6 complex [Pseudomonas aeruginosa PAO1],6H3L_B Structure of VgrG1 in the Type VI secretion 'pre-firing' VgrG1-Tse6-EagT6-EF-Tu-Tsi6 complex [Pseudomonas aeruginosa PAO1],6H3L_C Structure of VgrG1 in the Type VI secretion 'pre-firing' VgrG1-Tse6-EagT6-EF-Tu-Tsi6 complex [Pseudomonas aeruginosa PAO1],6H3N_A Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs [Pseudomonas aeruginosa PAO1],6H3N_B Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs [Pseudomonas aeruginosa PAO1],6H3N_C Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs [Pseudomonas aeruginosa PAO1]
4UHV_A 4.76e-90 3 523 2 518
Thestructure of VgrG1, the needle tip of the bacterial Type VI Secretion System [Pseudomonas aeruginosa PAO1],4UHV_B The structure of VgrG1, the needle tip of the bacterial Type VI Secretion System [Pseudomonas aeruginosa PAO1]
4NSO_A 3.04e-42 732 809 16 93
Crystalstructure of the effector-immunity protein complex [Vibrio cholerae O1 biovar El Tor str. N16961]
6SJL_A 2.34e-27 17 503 30 517
Structureof the Tle1 effector bound to the VgrG spike from the Type 6 secretion system [Escherichia coli],6SJL_B Structure of the Tle1 effector bound to the VgrG spike from the Type 6 secretion system [Escherichia coli],6SJL_C Structure of the Tle1 effector bound to the VgrG spike from the Type 6 secretion system [Escherichia coli],6SK0_A The VgrG spike from the Type 6 secretion system [Escherichia coli],6SK0_B The VgrG spike from the Type 6 secretion system [Escherichia coli],6SK0_C The VgrG spike from the Type 6 secretion system [Escherichia coli],6SKI_A The Tle hydrolase bound to the TTR domain of the VgrG spike of the Type 6 secretion system [Escherichia coli]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9KN42 0.0 1 809 1 809
Type VI secretion system spike protein VgrG3 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=vgrG3 PE=1 SV=1
Q9KNE7 1.11e-302 1 665 1 665
Type VI secretion system spike protein VgrG2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=vgrG2 PE=3 SV=1
Q9KS45 8.75e-288 1 657 1 654
Actin cross-linking toxin VgrG1 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=vgrG1 PE=1 SV=1
A0A0H3AIG7 6.62e-284 1 657 1 638
Actin cross-linking toxin VgrG1 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=vgrG1 PE=1 SV=1
K7WKL8 3.42e-188 4 637 7 635
Type VI secretion system spike protein VgrG1 OS=Aeromonas hydrophila OX=644 GN=vgrG1 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999702 0.000347 0.000003 0.000001 0.000000 0.000001

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002368_01411.