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CAZyme Information: MGYG000002374_01102

You are here: Home > Sequence: MGYG000002374_01102

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Campylobacter testudinum
Lineage Bacteria; Campylobacterota; Campylobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter testudinum
CAZyme ID MGYG000002374_01102
CAZy Family GT9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
306 34098.65 9.5314
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002374 1770849 Isolate United States North America
Gene Location Start: 35083;  End: 36003  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002374_01102.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT9 80 284 3.2e-27 0.8844444444444445

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd03789 GT9_LPS_heptosyltransferase 5.79e-37 2 280 1 236
lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
COG0859 RfaF 6.21e-35 1 276 2 287
ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis].
PRK10422 PRK10422 4.26e-10 2 283 7 305
lipopolysaccharide core biosynthesis protein; Provisional
pfam01075 Glyco_transf_9 3.18e-08 230 280 173 223
Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ALV65387.1 2.47e-222 1 306 1 306
AVK81632.1 1.67e-220 1 306 1 306
ANE32059.1 1.95e-219 1 306 1 306
QKF55221.1 1.95e-219 1 306 1 306
AJB45945.1 7.94e-219 1 306 1 306

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000065 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002374_01102.