dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000002381_03356

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Basic Information help

Species

Stenotrophomonas bentonitica_A

Lineage

Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas bentonitica_A

CAZyme ID

MGYG000002381_03356

CAZy Family

GH103

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
722	MGYG000002381_60\|CGC1	77445.09	8.8927

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002381	4114425	Isolate	not provided	not provided

Gene Location

Start: 1424; End: 3592 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000002381_03356.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH103	26	323	5.9e-109	0.9932203389830508

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13406	SLT_2	3.78e-141	25	321	1	292	Transglycosylase SLT domain. This family is related to the SLT domain pfam01464.
TIGR02283	MltB_2	1.41e-131	25	325	1	300	lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
COG2951	MltB	4.40e-109	16	330	31	342	Membrane-bound lytic murein transglycosylase B [Cell wall/membrane/envelope biogenesis].
cd09020	D-hex-6-P-epi_like	2.17e-99	451	718	1	269	D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
COG0676	YeaD	2.92e-91	439	715	14	281	D-hexose-6-phosphate mutarotase [Carbohydrate transport and metabolism].

CAZyme Hits help

Hit ID	Query Start	Query End	Hit Start	Hit End
AOX62374.1	1	722	1	722
AOA70506.1	7	721	8	724
QIO90054.1	7	722	8	726
QHB73317.1	1	722	5	725
AHY61028.1	7	722	1	718

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5AO8_A	1.45e-116	36	399	58	418	CrystalStructure of SltB3 from Pseudomonas aeruginosa in complex with NAG-NAM-pentapeptide [Pseudomonas aeruginosa]
5ANZ_A	5.74e-116	36	399	58	418	CrystalStructure of SltB3 from Pseudomonas aeruginosa. [Pseudomonas aeruginosa],5AO7_A Crystal Structure of SltB3 from Pseudomonas aeruginosa in complex with NAG-anhNAM-pentapeptide [Pseudomonas aeruginosa]
2HTA_A	7.13e-32	439	698	31	286	ChainA, Putative enzyme related to aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typhimurium],2HTA_B Chain B, Putative enzyme related to aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typhimurium],2HTB_A Chain A, Putative enzyme related to aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typhimurium],2HTB_B Chain B, Putative enzyme related to aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typhimurium],2HTB_C Chain C, Putative enzyme related to aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typhimurium],2HTB_D Chain D, Putative enzyme related to aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typhimurium]
5O8X_A	4.68e-28	41	323	20	299	TheX-ray Structure of Catenated Lytic Transglycosylase SltB1 from Pseudomonas aeruginosa [Pseudomonas aeruginosa],5O8X_B The X-ray Structure of Catenated Lytic Transglycosylase SltB1 from Pseudomonas aeruginosa [Pseudomonas aeruginosa]
4ANR_A	6.57e-28	41	323	37	316	Crystalstructure of soluble lytic Transglycosylase SltB1 from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P39173	1.75e-32	439	714	16	287	Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) OX=83333 GN=yeaD PE=1 SV=2
Q8ZPV9	2.79e-31	439	698	16	271	Putative glucose-6-phosphate 1-epimerase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=yeaD PE=1 SV=1
Q40784	1.52e-25	461	710	46	302	Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1
P41052	3.54e-25	39	316	70	348	Membrane-bound lytic murein transglycosylase B OS=Escherichia coli (strain K12) OX=83333 GN=mltB PE=1 SV=1
P44160	2.98e-11	479	696	53	251	Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_1317 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000296	0.999088	0.000173	0.000153	0.000138	0.000138

TMHMM Annotations help

There is no transmembrane helices in MGYG000002381_03356.