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CAZyme Information: MGYG000002383_00619

You are here: Home > Sequence: MGYG000002383_00619

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lacticaseibacillus zeae
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus; Lacticaseibacillus zeae
CAZyme ID MGYG000002383_00619
CAZy Family GH3
CAZyme Description Beta-hexosaminidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
683 MGYG000002383_9|CGC2 72572.3 5.5328
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002383 3001027 Isolate Italy Europe
Gene Location Start: 134690;  End: 136741  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002383_00619.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH3 115 345 6.6e-55 0.9722222222222222

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00933 Glyco_hydro_3 2.36e-67 52 380 1 316
Glycosyl hydrolase family 3 N terminal domain.
COG1472 BglX 1.15e-58 51 387 1 318
Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
PRK05337 PRK05337 4.58e-32 120 319 56 256
beta-hexosaminidase; Provisional
PRK15098 PRK15098 8.09e-22 41 386 35 358
beta-glucosidase BglX.
pfam07554 FIVAR 8.17e-06 489 550 1 69
FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QVI32968.1 0.0 1 683 1 683
ARY91138.1 0.0 1 683 1 683
QPC16370.1 0.0 1 683 1 683
BAN74096.1 0.0 1 683 1 683
QXG59952.1 0.0 1 683 1 683

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3BMX_A 5.08e-46 43 399 34 411
Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A 1.72e-45 43 399 8 385
ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A 2.54e-45 43 399 38 415
Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
6K5J_A 4.69e-45 51 383 11 339
Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3SQL_A 4.88e-37 38 384 11 349
CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P40406 2.78e-45 43 399 34 411
Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
Q5H1Q0 2.65e-32 69 337 12 277
Beta-hexosaminidase OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 GN=nagZ PE=3 SV=2
Q2P4L0 9.08e-32 69 337 12 277
Beta-hexosaminidase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) OX=342109 GN=nagZ PE=3 SV=1
Q4USG7 7.34e-31 69 337 12 277
Beta-hexosaminidase OS=Xanthomonas campestris pv. campestris (strain 8004) OX=314565 GN=nagZ PE=3 SV=1
B0RX17 7.34e-31 69 337 12 277
Beta-hexosaminidase OS=Xanthomonas campestris pv. campestris (strain B100) OX=509169 GN=nagZ PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000262 0.999013 0.000205 0.000181 0.000162 0.000142

TMHMM  Annotations      download full data without filtering help

start end
657 679