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CAZyme Information: MGYG000002383_01889

You are here: Home > Sequence: MGYG000002383_01889

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lacticaseibacillus zeae
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus; Lacticaseibacillus zeae
CAZyme ID MGYG000002383_01889
CAZy Family GH136
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
759 MGYG000002383_13|CGC11 81115.46 6.5525
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002383 3001027 Isolate Italy Europe
Gene Location Start: 569490;  End: 571769  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002383_01889.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH136 39 613 1.6e-132 0.9938900203665988

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07554 FIVAR 7.78e-07 626 689 3 69
FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.
pfam13229 Beta_helix 0.001 211 408 9 151
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam13229 Beta_helix 0.008 148 326 3 134
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam13229 Beta_helix 0.010 247 416 1 133
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QVI31874.1 0.0 1 759 1 759
QVI36696.1 0.0 1 759 1 759
QXG58488.1 0.0 1 759 1 759
ARY92660.1 0.0 1 759 1 759
ASX18217.1 0.0 1 759 1 756

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7V6M_A 5.34e-32 40 615 10 578
ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
6KQT_A 1.94e-18 41 430 247 627
CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
6KQS_A 5.90e-18 41 430 247 627
CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.015559 0.980166 0.003395 0.000312 0.000267 0.000269

TMHMM  Annotations      download full data without filtering help

start end
12 29
731 753