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CAZyme Information: MGYG000002385_01960
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Leminorella richardii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Leminorella; Leminorella richardii | |||||||||||
| CAZyme ID | MGYG000002385_01960 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | Murein DD-endopeptidase MepM | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 2100772; End: 2101857 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK11649 | PRK11649 | 0.0 | 1 | 332 | 1 | 332 | putative peptidase; Provisional |
| COG0739 | NlpD | 1.06e-16 | 95 | 333 | 1 | 183 | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain [Cell wall/membrane/envelope biogenesis]. |
| pfam01551 | Peptidase_M23 | 2.65e-06 | 312 | 333 | 2 | 23 | Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown. |
| pfam04225 | OapA | 4.97e-06 | 97 | 172 | 4 | 82 | Opacity-associated protein A LysM-like domain. This family includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation. This is a LysM-like domain. |
| smart00257 | LysM | 8.73e-06 | 97 | 141 | 1 | 44 | Lysin motif. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| SQI41242.1 | 2.74e-265 | 1 | 361 | 1 | 361 |
| VEJ55568.1 | 4.42e-179 | 1 | 333 | 1 | 325 |
| AKJ42374.1 | 4.42e-179 | 1 | 333 | 1 | 325 |
| QBH96508.1 | 6.78e-178 | 1 | 333 | 1 | 333 |
| QKJ04469.1 | 2.05e-145 | 1 | 333 | 1 | 332 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2GU1_A | 1.19e-45 | 98 | 333 | 10 | 252 | Crystalstructure of a zinc containing peptidase from vibrio cholerae [Vibrio cholerae] |
| 6UE4_A | 2.12e-43 | 97 | 332 | 44 | 285 | ShyAEndopeptidase from Vibrio cholerae (Closed form) [Vibrio cholerae O1 biovar El Tor str. N16961],6UE4_B ShyA Endopeptidase from Vibrio cholerae (Closed form) [Vibrio cholerae O1 biovar El Tor str. N16961] |
| 6U2A_A | 2.26e-43 | 97 | 332 | 41 | 282 | ShyAendopeptidase from Vibrio cholera (open form) [Vibrio cholerae] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P0AFS9 | 4.89e-125 | 1 | 333 | 1 | 334 | Murein DD-endopeptidase MepM OS=Escherichia coli (strain K12) OX=83333 GN=mepM PE=1 SV=1 |
| P0AFT0 | 4.89e-125 | 1 | 333 | 1 | 334 | Murein DD-endopeptidase MepM OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=mepM PE=3 SV=1 |
| P0AFT1 | 4.89e-125 | 1 | 333 | 1 | 334 | Murein DD-endopeptidase MepM OS=Shigella flexneri OX=623 GN=mepM PE=3 SV=1 |
| P44693 | 8.80e-65 | 98 | 347 | 131 | 385 | Uncharacterized metalloprotease HI_0409 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_0409 PE=3 SV=1 |
| Q8K9M4 | 6.06e-42 | 97 | 333 | 78 | 311 | Uncharacterized metalloprotease BUsg_310 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=BUsg_310 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000000 | 0.000027 | 0.000000 | 0.000000 | 0.000000 | 0.000003 |