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CAZyme Information: MGYG000002387_00045
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Lactobacillus paragasseri | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus paragasseri | |||||||||||
| CAZyme ID | MGYG000002387_00045 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | Chromosome partition protein Smc | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 46346; End: 51802 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd13402 | LT_TF-like | 8.01e-29 | 1620 | 1728 | 8 | 116 | lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
| pfam00877 | NLPC_P60 | 4.91e-23 | 1434 | 1522 | 2 | 92 | NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins. |
| COG0791 | Spr | 5.35e-19 | 1434 | 1516 | 88 | 177 | Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis]. |
| COG5283 | COG5283 | 2.31e-18 | 27 | 703 | 26 | 746 | Phage-related tail protein [Mobilome: prophages, transposons]. |
| NF033742 | NlpC_p60_RipB | 3.47e-17 | 1435 | 1509 | 91 | 179 | NlpC/P60 family peptidoglycan endopeptidase RipB. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ART97440.1 | 0.0 | 1 | 1818 | 1 | 1818 |
| QTP20241.1 | 0.0 | 1 | 1818 | 1 | 1818 |
| QXL48446.1 | 0.0 | 1 | 1818 | 1 | 1817 |
| VEF35182.1 | 0.0 | 1 | 1818 | 1 | 1816 |
| QTP20537.1 | 0.0 | 1 | 1818 | 1 | 1816 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7CFL_A | 6.96e-18 | 1434 | 1534 | 27 | 137 | ChainA, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_B Chain B, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_C Chain C, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_D Chain D, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile] |
| 3I86_A | 2.82e-13 | 1435 | 1521 | 26 | 126 | Crystalstructure of the P60 Domain from M. avium subspecies paratuberculosis antigen MAP1204 [Mycobacterium avium subsp. paratuberculosis],3I86_B Crystal structure of the P60 Domain from M. avium subspecies paratuberculosis antigen MAP1204 [Mycobacterium avium subsp. paratuberculosis] |
| 3PBI_A | 4.30e-13 | 1435 | 1521 | 99 | 199 | ChainA, Invasion Protein [Mycobacterium tuberculosis] |
| 3NE0_A | 3.59e-12 | 1435 | 1521 | 99 | 199 | Structureand functional regulation of RipA, a mycobacterial enzyme essential for daughter cell separation [Mycobacterium tuberculosis H37Rv] |
| 3PBC_A | 3.59e-12 | 1435 | 1521 | 99 | 199 | ChainA, Invasion Protein [Mycobacterium tuberculosis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P9WHU4 | 3.86e-12 | 1435 | 1521 | 126 | 226 | Peptidoglycan endopeptidase RipB OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=ripB PE=3 SV=1 |
| P9WHU5 | 3.86e-12 | 1435 | 1521 | 126 | 226 | Peptidoglycan endopeptidase RipB OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ripB PE=1 SV=1 |
| P21171 | 8.04e-12 | 1434 | 1511 | 382 | 461 | Probable endopeptidase p60 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=iap PE=1 SV=2 |
| Q01836 | 9.97e-12 | 1423 | 1511 | 355 | 444 | Probable endopeptidase p60 OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=iap PE=3 SV=2 |
| Q01837 | 1.58e-11 | 1423 | 1534 | 412 | 524 | Probable endopeptidase p60 OS=Listeria ivanovii OX=1638 GN=iap PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000032 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |