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CAZyme Information: MGYG000002392_02619

You are here: Home > Sequence: MGYG000002392_02619

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Listeria monocytogenes
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Listeriaceae; Listeria; Listeria monocytogenes
CAZyme ID MGYG000002392_02619
CAZy Family CBM50
CAZyme Description Cell wall-binding protein YocH
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
277 MGYG000002392_6|CGC2 29071.07 5.7616
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002392 2941624 Isolate not provided not provided
Gene Location Start: 156565;  End: 157398  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002392_02619.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3584 3D 6.77e-47 180 275 12 109
3D (Asp-Asp-Asp) domain [Function unknown].
cd14667 3D_containing_proteins 1.68e-35 189 276 1 90
Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues. This family contains the 3D domain, named for its 3 conserved aspartates, including similar uncharacterized proteins. These proteins contain the critical active site aspartate of mltA-like lytic transglycosylases where the 3D domain forms a larger domain with the N-terminal region. This domain is also found in conjunction with numerous other domains such as the Escherichia coli MltA, a membrane-bound lytic transglycosylase comprised of 2 domains separated by a large groove, where the peptidoglycan strand binds. Domain A is made up of an N-terminal and a C-terminal portion, corresponding to the 3D domain and Domain B is inserted within the linear sequence of domain A. MltA is distinct from other bacterial LTs, which are similar to each other. Escherichia coli peptidoglycan lytic transglycosylase (LT) initiates cell wall recycling in response to damage, during bacterial fission, and cleaves peptidoglycan (PG) to create functional spaces in its wall. PG chains (also known as murein), the major components of the bacterial cell wall, are comprised of alternating beta-1-4-linked N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), and lytic transglycosylases cleave this beta-1-4 bond.
PRK06347 PRK06347 3.14e-26 17 137 398 536
1,4-beta-N-acetylmuramoylhydrolase.
PRK06347 PRK06347 6.14e-24 16 137 322 461
1,4-beta-N-acetylmuramoylhydrolase.
pfam06725 3D 9.00e-24 216 277 1 72
3D domain. This short presumed domain contains three conserved aspartate residues, hence the name 3D. It has been shown to be part of the catalytic double psi beta barrel domain of MltA.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADB69463.1 8.05e-161 1 277 1 277
APV06334.1 8.05e-161 1 277 1 277
CDM17863.1 8.05e-161 1 277 1 277
APV00312.1 8.05e-161 1 277 1 277
APV09430.1 8.05e-161 1 277 1 277

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4WLI_A 7.06e-13 189 276 16 113
StationaryPhase Survival Protein YuiC from B.subtilis [Bacillus subtilis subsp. subtilis str. 168]
4WLK_A 1.07e-12 189 276 37 134
StationaryPhase Survival Protein YuiC from B.subtilis complexed with reaction product [Bacillus subtilis subsp. subtilis str. 168],4WLK_B Stationary Phase Survival Protein YuiC from B.subtilis complexed with reaction product [Bacillus subtilis subsp. subtilis str. 168]
4WJT_A 1.09e-12 189 276 37 134
StationaryPhase Survival Protein YuiC from B.subtilis complexed with NAG [Bacillus subtilis subsp. subtilis str. 168],4WJT_B Stationary Phase Survival Protein YuiC from B.subtilis complexed with NAG [Bacillus subtilis subsp. subtilis str. 168]
2MKX_A 4.94e-09 80 122 4 46
Solutionstructure of LysM the peptidoglycan binding domain of autolysin AtlA from Enterococcus faecalis [Enterococcus faecalis V583]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O34669 1.65e-63 1 277 1 287
Cell wall-binding protein YocH OS=Bacillus subtilis (strain 168) OX=224308 GN=yocH PE=1 SV=1
P37546 8.48e-26 182 277 310 407
Putative cell wall shaping protein YabE OS=Bacillus subtilis (strain 168) OX=224308 GN=yabE PE=2 SV=2
O31852 8.49e-21 1 136 1 143
D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlS PE=1 SV=1
Q49UX4 1.27e-20 1 134 1 139
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sle1 PE=3 SV=1
Q5HRU2 3.02e-19 2 131 3 134
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=sle1 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000267 0.998994 0.000196 0.000191 0.000177 0.000149

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002392_02619.