logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002394_01342

You are here: Home > Sequence: MGYG000002394_01342

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella rara
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella rara
CAZyme ID MGYG000002394_01342
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
858 MGYG000002394_9|CGC1 97585.01 8.5536
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002394 3788330 Isolate Russia Europe
Gene Location Start: 74201;  End: 76777  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.67

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH105 497 848 5e-107 0.9819277108433735
GH28 68 444 1.2e-81 0.9261538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.00e-93 32 437 72 454
Polygalacturonase [Carbohydrate transport and metabolism].
pfam07470 Glyco_hydro_88 4.42e-89 478 849 1 342
Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.
COG4225 YesR 2.48e-78 504 848 34 355
Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.34e-25 70 411 1 274
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 3.57e-15 43 341 24 257
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCS86040.1 0.0 1 853 1 851
AGB29347.1 0.0 2 849 3 853
QIM09915.1 0.0 1 851 1 893
QNT65241.1 0.0 2 850 3 871
QVJ80657.1 0.0 5 853 7 880

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4WU0_A 2.84e-86 476 849 2 361
StructuralAnalysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824],4WU0_B Structural Analysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824]
3JUR_A 5.82e-81 21 467 2 434
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 3.04e-67 25 443 20 428
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
1NC5_A 6.65e-51 503 847 38 365
Structureof Protein of Unknown Function of YteR from Bacillus Subtilis [Bacillus subtilis],2D8L_A Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc [Bacillus subtilis]
2GH4_A 2.49e-50 503 847 28 355
ChainA, Putative glycosyl hydrolase yteR [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O34559 3.64e-50 503 847 38 365
Unsaturated rhamnogalacturonyl hydrolase YteR OS=Bacillus subtilis (strain 168) OX=224308 GN=yteR PE=1 SV=1
A7PZL3 1.26e-27 59 372 78 356
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P0A3U6 2.12e-27 638 845 20 227
Protein Atu3128 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=Atu3128 PE=3 SV=1
P0A3U7 2.12e-27 638 845 20 227
24.9 kDa protein in picA locus OS=Rhizobium radiobacter OX=358 PE=2 SV=1
P15922 7.93e-21 41 476 150 586
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000380 0.998894 0.000165 0.000185 0.000161 0.000161

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002394_01342.