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CAZyme Information: MGYG000002394_01949

You are here: Home > Sequence: MGYG000002394_01949

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella rara
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella rara
CAZyme ID MGYG000002394_01949
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
465 MGYG000002394_16|CGC2 52161.76 7.8745
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002394 3788330 Isolate Russia Europe
Gene Location Start: 65901;  End: 67298  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002394_01949.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 76 430 3.8e-73 0.9323076923076923

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 9.70e-74 21 357 53 392
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03003 PLN03003 3.97e-20 47 375 20 303
Probable polygalacturonase At3g15720
pfam00295 Glyco_hydro_28 5.04e-15 150 422 54 273
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 1.28e-14 47 363 49 330
Probable polygalacturonase
PLN02218 PLN02218 2.26e-13 31 425 45 409
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADY35504.1 4.80e-237 5 465 5 462
AND21958.1 1.24e-232 30 465 8 443
AII62903.1 2.78e-232 30 465 30 465
QUT83816.1 2.78e-232 30 465 30 465
QJR67967.1 2.78e-232 30 465 30 465

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 1.52e-78 35 425 12 411
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 5.15e-77 48 431 42 432
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 2.46e-15 50 387 156 514
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
4MR0_A 7.70e-09 33 173 98 235
Crystalstructure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6],4MR0_B Crystal structure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6]
3ZPP_A 1.73e-07 51 173 24 143
Structureof the Streptococcus pneumoniae surface protein and adhesin PfbA [Streptococcus pneumoniae TIGR4]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 1.01e-33 52 424 64 424
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
Q9LW07 7.14e-22 47 425 20 358
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1
P15922 3.37e-19 22 427 124 557
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P27644 4.84e-14 207 364 25 187
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
Q8RY29 1.50e-12 37 425 54 409
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000218 0.999218 0.000148 0.000141 0.000128 0.000129

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002394_01949.